C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: codanin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562465 CDAN1-002 ENSG00000140326 9606 - 15:42723559-42730764 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverMuscleOvaryTestisENST00000562465
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Muscle Ovary Testis
ENST00000562465 0.796±0.00 0.979±0.00 0.415±0.00 0.788±0.00 1.297±0.00 0.779±0.00 0.521±0.00 1.749±0.00 1.666±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PG CIL_0005PG_0001 CGP 15:42575659-42737126
CIL_0005YE CIL_0005YE_0001 CGP 15:42723559-42920809

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148285 Cdan1-002 processed_transcript Mus_musculus 0 1679
ENSMUST00000110701 Cdan1-201 protein_coding Mus_musculus 0 1085
ENSMUST00000110700 Cdan1-001 protein_coding Mus_musculus 0 1085
ENSMUST00000124906 Cdan1-007 retained_intron Mus_musculus 0 481

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