C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: congenital dyserythropoietic anemia, type I (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027284 Cdan1 10090 - 2:120716154-120850128 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110700 Cdan1-001 120716522-120731518 protein_coding
  ENSMUST00000110701 Cdan1-201 120716154-120731517 protein_coding
  ENSMUST00000124906 Cdan1-007 120722396-120724455 retained_intron
  ENSMUST00000126133 Cdan1-006 120725611-120727977 retained_intron
  ENSMUST00000126753 Cdan1-008 120718621-120720553 processed_transcript
  ENSMUST00000136725 Cdan1-004 120729942-120731490 processed_transcript
  ENSMUST00000148285 Cdan1-002 120718186-120850128 processed_transcript
  ENSMUST00000150860 Cdan1-003 120728628-120731506 processed_transcript
  ENSMUST00000152692 Cdan1-005 120727918-120728638 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000110700ENSMUST00000110701ENSMUST00000136725ENSMUST00000148285
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000110700 6.813±0.05 3.276±0.79 N/A 4.262±0.00 4.250±0.93 2.593±0.51 2.319±0.46 2.504±0.40 2.570±2.18 1.283±0.02 6.304±1.52 2.167±0.04 N/A
ENSMUST00000110701 N/A 2.683±0.45 2.869±0.00 4.179±0.06 3.761±0.63 1.675±0.23 N/A 1.521±0.60 2.295±1.50 N/A 4.848±1.06 1.427±0.09 N/A
ENSMUST00000136725 N/A 10.063±0.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148285 N/A 1.533±0.07 N/A N/A 2.184±0.00 1.014±0.20 1.187±0.00 1.323±0.33 0.599±0.09 1.098±0.02 3.456±1.33 3.025±0.32 10.375±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PH CIL_0005PH_0002 CGP 2:120609383-120731895
CIL_0005PG CIL_0005PG_0002 CGP 2:120629126-120850128
CIL_0005YE CIL_0005YE_0002 CGP 2:120716154-120850604

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005886 IEA plasma membrane
GO:0006325 IEA chromatin organization
GO:0008104 IEA protein localization
GO:0008156 ISS negative regulation of DNA replication
GO:0012505 IEA endomembrane system
GO:0016021 IEA integral component of membrane
GO:0031497 ISS chromatin assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042261 cdan1 congenital dyserythropoietic anemia, type I protein_coding Danio_rerio
ENSG00000140326 CDAN1 codanin 1 protein_coding Homo_sapiens

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