C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: codanin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356231 CDAN1-001 ENSG00000140326 9606 - 15:42723562-42737126 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000356231
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000356231 1.223±0.00 0.795±0.00 0.112±0.00 0.495±0.00 0.817±0.71 1.051±0.00 0.540±0.00 1.590±0.00 0.549±0.00 0.917±0.00 2.750±0.64 1.698±0.61 2.262±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PG CIL_0005PG_0001 CGP 15:42575659-42737126
CIL_0005YE CIL_0005YE_0001 CGP 15:42723559-42920809

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006325 IMP chromatin organization
GO:0008104 IMP protein localization
GO:0008156 IMP negative regulation of DNA replication
GO:0012505 IDA endomembrane system
GO:0016021 IEA integral component of membrane
GO:0031497 IMP chromatin assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110700 Cdan1-001 protein_coding Mus_musculus 0 4076
ENSMUST00000110701 Cdan1-201 protein_coding Mus_musculus 0 3978
ENSMUST00000148285 Cdan1-002 processed_transcript Mus_musculus 0 2342
ENSMUST00000150860 Cdan1-003 processed_transcript Mus_musculus 0 776
ENSMUST00000136725 Cdan1-004 processed_transcript Mus_musculus 0 573
ENSMUST00000124906 Cdan1-007 retained_intron Mus_musculus 0 481
ENSMUST00000126133 Cdan1-006 retained_intron Mus_musculus 0 451
ENSMUST00000154193 Stard9-002 nonsense_mediated_decay Mus_musculus 0 418
ENSMUST00000152692 Cdan1-005 retained_intron Mus_musculus 1.4013e-45 189
ENSMUST00000129384 Stard9-005 processed_transcript Mus_musculus 1.00053e-42 180

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