C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: secretory carrier membrane protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140497 SCAMP2 9606 - 15:74843730-74873365 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268099 SCAMP2-001 74843730-74873365 protein_coding
  ENST00000562363 SCAMP2-008 74848682-74873310 protein_coding
  ENST00000563663 SCAMP2-004 74843764-74873355 nonsense_mediated_decay
  ENST00000563829 SCAMP2-005 74844855-74873365 retained_intron
  ENST00000564529 SCAMP2-007 74850512-74873358 protein_coding
  ENST00000565345 SCAMP2-009 74848604-74873040 protein_coding
  ENST00000566480 SCAMP2-003 74843732-74854586 protein_coding
  ENST00000566557 SCAMP2-011 74851904-74873332 retained_intron
  ENST00000567638 SCAMP2-010 74848426-74852181 retained_intron
  ENST00000569124 SCAMP2-006 74853757-74873029 retained_intron
  ENST00000569251 SCAMP2-013 74845008-74852213 retained_intron
  ENST00000569904 SCAMP2-012 74845206-74873302 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268099ENST00000563663ENST00000563829ENST00000565345ENST00000566480ENST00000569251ENST00000569904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268099 8.869±0.00 9.974±0.00 1.916±0.00 1.538±0.36 8.371±0.00 N/A 2.768±2.45 17.003±0.00 5.814±0.00 9.145±0.00 N/A 24.484±12.46 54.015±13.17 7.608±0.00
ENST00000563663 12.232±0.00 16.265±0.00 N/A 3.321±0.00 8.979±7.10 11.443±0.00 2.532±2.18 19.328±0.00 6.691±4.52 6.261±4.82 9.782±0.00 37.225±0.00 31.420±0.00 8.269±3.34
ENST00000563829 N/A N/A N/A N/A 0.897±0.00 1.444±0.00 0.252±0.00 N/A N/A N/A N/A 1.462±0.00 N/A 2.369±0.00
ENST00000565345 N/A N/A N/A N/A 1.387±0.00 N/A 1.161±0.00 3.080±0.00 1.641±0.00 N/A N/A N/A N/A N/A
ENST00000566480 N/A 3.991±0.00 N/A N/A 0.792±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569251 18.822±0.00 11.434±0.00 8.969±0.00 4.317±2.46 7.778±3.50 10.839±0.62 3.758±2.50 14.393±6.82 8.912±5.73 9.835±1.88 14.881±9.18 12.010±1.87 N/A 13.737±4.45
ENST00000569904 18.683±0.00 N/A N/A 7.485±0.00 21.178±0.00 N/A N/A 19.255±0.00 N/A 13.311±0.00 17.284±0.00 N/A N/A 12.435±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0001 VISTA 15:74278506-74880453
CIL_0005AU CIL_0005AU_0002 CGP 15:74843730-74902219

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0015031 IEA:IDA protein transport
GO:0016021 IEA:IDA integral component of membrane
GO:0030133 IEA transport vesicle
GO:0032588 IDA trans-Golgi network membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0055038 IDA recycling endosome membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010279 scamp2 secretory carrier membrane protein 2 protein_coding Danio_rerio
ENSDARG00000017010 scamp2l secretory carrier membrane protein 2, like protein_coding Danio_rerio
ENSMUSG00000040188 Scamp2 secretory carrier membrane protein 2 protein_coding Mus_musculus

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