C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAH (Asp-Glu-Ala-His) box polypeptide 38
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140829 DHX38 9606 + 16:72093562-72112912 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268482 DHX38-001 72093562-72112912 protein_coding
  ENST00000562774 DHX38-017 72104486-72112908 protein_coding
  ENST00000563650 DHX38-009 72097160-72099888 retained_intron
  ENST00000563819 DHX38-015 72108296-72112639 protein_coding
  ENST00000564307 DHX38-010 72096927-72099826 retained_intron
  ENST00000564622 DHX38-014 72108297-72108878 retained_intron
  ENST00000566329 DHX38-018 72101082-72103921 retained_intron
  ENST00000566489 DHX38-008 72093924-72096867 protein_coding
  ENST00000566794 DHX38-007 72093613-72096912 protein_coding
  ENST00000567142 DHX38-016 72108372-72112909 protein_coding
  ENST00000567552 DHX38-011 72108354-72112650 retained_intron
  ENST00000569935 DHX38-012 72103101-72104554 retained_intron
  ENST00000569952 DHX38-013 72108630-72109756 retained_intron
  ENST00000579387 DHX38-002 72093847-72112903 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000268482ENST00000563650ENST00000566489ENST00000566794ENST00000567142ENST00000579387
Transcript ID Adipose Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000268482 9.038±0.00 0.809±0.00 12.155±0.00 4.567±2.78 4.446±0.00 2.890±1.38 4.270±0.00 4.989±0.00 7.569±4.22 N/A 15.941±0.18
ENST00000563650 N/A N/A N/A N/A N/A N/A N/A 2.185±0.00 N/A N/A N/A
ENST00000566489 N/A 9.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566794 N/A N/A N/A N/A 9.450±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567142 N/A N/A N/A N/A N/A N/A N/A N/A 17.850±0.00 15.291±0.00 N/A
ENST00000579387 N/A N/A 1.504±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098E CIL_00098E_0001 VISTA 16:71920667-72521926
CIL_00098B CIL_00098B_0001 VISTA 16:71941307-72542883
CIL_0002Q2 CIL_0002Q2_0001 CGP 16:72044289-72094431
CIL_0008FG CIL_0008FG_0001 VISTA 16:72070634-72673692
CIL_0004Y7 CIL_0004Y7_0002 CGP 16:72093562-72176878

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 NAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006200 IEA ATP catabolic process
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 TAS mRNA export from nucleus
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053946 dhx38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 protein_coding Danio_rerio
ENSMUSG00000037993 Dhx38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 protein_coding Mus_musculus

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