C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAH (Asp-Glu-Ala-His) box polypeptide 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000268482 DHX38-001 ENSG00000140829 9606 + 16:72093562-72112912 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLungMuscleOvaryTestisENST00000268482
Transcript ID Adipose Bladder Brain Breast Colon Heart Lung Muscle Ovary Testis
ENST00000268482 9.038±0.00 0.809±0.00 12.155±0.00 4.567±2.78 4.446±0.00 2.890±1.38 4.270±0.00 4.989±0.00 7.569±4.22 15.941±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098E CIL_00098E_0001 VISTA 16:71920667-72521926
CIL_00098B CIL_00098B_0001 VISTA 16:71941307-72542883
CIL_0002Q2 CIL_0002Q2_0001 CGP 16:72044289-72094431
CIL_0008FG CIL_0008FG_0001 VISTA 16:72070634-72673692
CIL_0004Y7 CIL_0004Y7_0002 CGP 16:72093562-72176878

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 NAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006200 IEA ATP catabolic process
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 TAS mRNA export from nucleus
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042601 Dhx38-201 protein_coding Mus_musculus 0 4905
ENSDART00000128289 dhx38-201 protein_coding Danio_rerio 0 1953
ENSDART00000076056 dhx38-001 protein_coding Danio_rerio 0 1953

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