C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycine cleavage system protein H (aminomethyl carrier)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140905 GCSH 9606 - 16:81081961-81096403 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315467 GCSH-001 81081961-81096403 protein_coding
  ENST00000561801 GCSH-005 81082823-81096257 nonsense_mediated_decay
  ENST00000564386 GCSH-002 81082336-81096262 nonsense_mediated_decay
  ENST00000564477 GCSH-003 81084246-81096318 nonsense_mediated_decay
  ENST00000566566 GCSH-004 81084316-81096299 protein_coding
  ENST00000569885 GCSH-006 81082509-81096240 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315467ENST00000561801ENST00000564386ENST00000566566ENST00000569885
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315467 N/A 1.798±0.00 2.955±0.00 9.516±0.18 4.603±1.03 1.281±0.00 2.805±0.31 11.718±4.04 4.582±2.87 1.111±0.00 4.371±0.45 3.656±1.80 5.359±2.06 4.423±0.00
ENST00000561801 N/A N/A N/A N/A N/A 4.860±0.00 N/A N/A N/A 2.672±0.00 N/A 33.694±0.00 73.841±0.00 15.703±0.00
ENST00000564386 2.633±0.00 6.507±0.00 2.106±0.00 15.277±0.00 10.815±0.00 2.487±1.22 5.742±0.00 8.973±1.77 21.809±0.00 1.137±0.28 3.113±0.00 8.643±4.93 17.188±1.88 8.285±0.00
ENST00000566566 N/A 4.103±0.00 2.535±0.00 N/A N/A N/A N/A N/A 1.811±0.00 N/A N/A 18.508±0.00 21.248±13.29 6.661±0.00
ENST00000569885 N/A N/A N/A N/A N/A 2.904±0.00 N/A 7.103±0.00 N/A 1.530±0.00 4.652±0.00 7.843±0.00 18.002±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z7 CIL_0001Z7_0001 CGP 16:81053497-81096403
CIL_00043F CIL_00043F_0001 CGP 16:81081961-81181213

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004047 IEA aminomethyltransferase activity
GO:0005739 IEA mitochondrion
GO:0005960 IEA glycine cleavage complex
GO:0006546 TAS glycine catabolic process
GO:0019464 IEA glycine decarboxylation via glycine cleavage system
GO:0019899 IEA enzyme binding
GO:0032259 TAS methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016717 gcsha glycine cleavage system protein H (aminomethyl carrier), a protein_coding Danio_rerio
ENSDARG00000042096 gcshb glycine cleavage system protein H (aminomethyl carrier), b protein_coding Danio_rerio
ENSDARG00000091655 CU611050.1 glycine cleavage system protein H (aminomethyl carrier) protein_coding Danio_rerio
ENSMUSG00000034424 Gcsh glycine cleavage system protein H (aminomethyl carrier) protein_coding Mus_musculus

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