C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine cleavage system protein H (aminomethyl carrier)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315467 GCSH-001 ENSG00000140905 9606 - 16:81081961-81096403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315467
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315467 1.798±0.00 2.955±0.00 9.516±0.18 4.603±1.03 1.281±0.00 2.805±0.31 11.718±4.04 4.582±2.87 1.111±0.00 4.371±0.45 3.656±1.80 5.359±2.06 4.423±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z7 CIL_0001Z7_0001 CGP 16:81053497-81096403
CIL_00043F CIL_00043F_0001 CGP 16:81081961-81181213

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004047 IEA aminomethyltransferase activity
GO:0005739 IEA mitochondrion
GO:0005960 IEA glycine cleavage complex
GO:0006546 TAS glycine catabolic process
GO:0019464 IEA glycine decarboxylation via glycine cleavage system
GO:0019899 IEA enzyme binding
GO:0032259 TAS methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040484 Gcsh-001 protein_coding Mus_musculus 0 505
ENSMUST00000118891 Gm15047-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000162548 Gcsh-002 processed_transcript Mus_musculus 0 320

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