C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39 (zinc transporter), member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141424 SLC39A6 9606 - 18:36108532-36129385 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269187 SLC39A6-002 36108532-36129318 protein_coding
  ENST00000440549 SLC39A6-001 36111000-36129385 protein_coding
  ENST00000586829 SLC39A6-005 36111056-36122115 protein_coding
  ENST00000590986 SLC39A6-004 36109148-36129381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269187ENST00000590986
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269187 7.532±0.00 3.057±0.00 1.868±0.00 6.676±0.61 14.759±9.63 4.953±3.95 2.285±1.60 5.150±3.30 3.170±1.61 5.825±0.00 2.419±1.89 11.784±6.52 12.044±7.98 14.716±3.98
ENST00000590986 N/A N/A 3.573±0.00 N/A 2.906±0.00 3.305±0.00 0.774±0.00 2.410±0.00 6.542±0.00 N/A 0.809±0.00 2.899±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W2 CIL_0003W2_0001 CGP 18:35984387-36129385
CIL_00000T CIL_00000T_0001 CGP 18:36108532-36180556

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005385 IDA zinc ion transmembrane transporter activity
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006882 IDA cellular zinc ion homeostasis
GO:0009986 IDA cell surface
GO:0016020 IEA membrane
GO:0030001 IEA metal ion transport
GO:0031258 IDA lamellipodium membrane
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA:TAS transmembrane transport
GO:0071577 IMP zinc ion transmembrane transport
GO:0071578 IDA zinc ion transmembrane import

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068143 slc39a6 solute carrier family 39 (zinc transporter), member 6 protein_coding Danio_rerio
ENSMUSG00000024270 Slc39a6 solute carrier family 39 (metal ion transporter), member 6 protein_coding Mus_musculus

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