C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269187 SLC39A6-002 ENSG00000141424 9606 - 18:36108532-36129318 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269187 7.532±0.00 3.057±0.00 1.868±0.00 6.676±0.61 14.759±9.63 4.953±3.95 2.285±1.60 5.150±3.30 3.170±1.61 5.825±0.00 2.419±1.89 11.784±6.52 12.044±7.98 14.716±3.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W2 CIL_0003W2_0001 CGP 18:35984387-36129385
CIL_00000T CIL_00000T_0001 CGP 18:36108532-36180556

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005385 IDA zinc ion transmembrane transporter activity
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006882 IDA cellular zinc ion homeostasis
GO:0009986 IDA cell surface
GO:0016020 IEA membrane
GO:0030001 IEA metal ion transport
GO:0031258 IDA lamellipodium membrane
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA:TAS transmembrane transport
GO:0071577 IMP zinc ion transmembrane transport
GO:0071578 IDA zinc ion transmembrane import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070726 Slc39a6-001 protein_coding Mus_musculus 0 2266
ENSMUST00000154205 Slc39a6-002 protein_coding Mus_musculus 0 1437
ENSMUST00000128106 Slc39a6-004 retained_intron Mus_musculus 0 577

Loading