C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003W2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141425-ENSG00000141424 CGP 9606 18:35984387-36129385
GeneTranscriptPositionBiotype
ENSG00000141424 (SLC39A6)
solute carrier family 39 (zinc transporter), member 6 		ENST00000269187 (SLC39A6-002) 36108532-36129318 protein_coding
ENST00000440549 (SLC39A6-001) 36111000-36129385 protein_coding
ENST00000586829 (SLC39A6-005) 36111056-36122115 protein_coding
ENST00000590986 (SLC39A6-004) 36109148-36129381 protein_coding
ENSG00000141425 (RPRD1A)
regulation of nuclear pre-mRNA domain containing 1A 		ENST00000357384 (RPRD1A-004) 35989886-36067556 protein_coding
ENST00000399022 (RPRD1A-001) 35989824-36067576 protein_coding
ENST00000585879 (RPRD1A-011) 35984389-35993163 nonsense_mediated_decay
ENST00000585953 (RPRD1A-009) 36024889-36030850 protein_coding
ENST00000587563 (RPRD1A-010) 35984387-35993300 nonsense_mediated_decay
ENST00000588459 (RPRD1A-008) 36052875-36064424 processed_transcript
ENST00000588737 (RPRD1A-002) 35993040-36067559 protein_coding
ENST00000589050 (RPRD1A-003) 36025599-36067557 non_stop_decay
ENST00000590898 (RPRD1A-005) 35989824-36067530 protein_coding
ENST00000591994 (RPRD1A-006) 36025599-36028190 retained_intron
ENST00000592674 (RPRD1A-007) 36033752-36067576 nonsense_mediated_decay
CIL_0003W2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040446-ENSMUSG00000024270 CGP 10090 18:24484962-24603817
GeneTranscriptPositionBiotype
ENSMUSG00000024270 (Slc39a6)
solute carrier family 39 (metal ion transporter), member 6 		ENSMUST00000070726 (Slc39a6-001) 24579881-24603817 protein_coding
ENSMUST00000128106 (Slc39a6-004) 24596317-24599420 retained_intron
ENSMUST00000152504 (Slc39a6-003) 24601485-24603293 protein_coding
ENSMUST00000154205 (Slc39a6-002) 24582308-24603515 protein_coding
ENSMUSG00000040446 (Rprd1a)
regulation of nuclear pre-mRNA domain containing 1A 		ENSMUST00000046206 (Rprd1a-201) 24484962-24530204 protein_coding
ENSMUSG00000095437 (Gm23606)
predicted gene, 23606 		ENSMUST00000116938 (Gm23606-201) 24558602-24558722 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003W2_0001ENSG00000141424ENST00000269187ENST00000440549ENST00000586829ENST00000590986ENSG00000141425ENST00000357384ENST00000399022ENST00000585879ENST00000585953ENST00000587563ENST00000588459ENST00000588737ENST00000589050ENST00000590898ENST00000591994ENST00000592674CIL_0003W2_0002ENSMUSG00000024270ENSMUST00000070726ENSMUST00000128106ENSMUST00000152504ENSMUST00000154205ENSMUSG00000040446ENSMUST00000046206ENSMUSG00000095437ENSMUST00000116938
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003W2_0001ENSG00000141424ENST00000269187ENST00000590986ENSG00000141425ENST00000357384ENST00000399022ENST00000585953ENST00000588737ENST00000589050ENST00000590898ENST00000592674CIL_0003W2_0002ENSMUSG00000024270ENSMUST00000070726ENSMUST00000128106ENSMUST00000154205ENSMUSG00000040446ENSMUST00000046206ENSMUSG00000095437ENSMUST00000116938
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141424 ENST00000269187 7.532±0.00 3.057±0.00 1.868±0.00 6.676±0.61 14.759±9.63 4.953±3.95 2.285±1.60 5.150±3.30 3.170±1.61 5.825±0.00 2.419±1.89 11.784±6.52 12.044±7.98 14.716±3.98
ENST00000440549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590986 N/A N/A 3.573±0.00 N/A 2.906±0.00 3.305±0.00 0.774±0.00 2.410±0.00 6.542±0.00 N/A 0.809±0.00 2.899±0.00 N/A N/A
ENSG00000141425 ENST00000357384 3.106±0.00 N/A N/A 15.395±0.00 6.423±0.00 9.923±0.00 N/A 4.744±0.00 1.586±0.00 5.856±0.00 2.307±1.11 4.609±1.46 0.996±0.00 9.270±0.00
ENST00000399022 3.926±0.00 4.990±0.00 1.613±0.00 11.666±0.56 3.920±2.96 7.047±3.60 5.622±3.49 2.842±0.70 4.354±1.89 3.614±0.00 3.685±2.54 3.956±1.27 2.583±0.61 8.246±0.00
ENST00000585879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.765±0.73 0.688±0.00 N/A
ENST00000587563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588737 N/A N/A 2.848±0.00 7.702±0.00 N/A N/A 2.142±0.00 N/A N/A 4.504±0.00 N/A 2.979±1.64 1.184±0.00 6.853±0.00
ENST00000589050 N/A N/A 9.033±0.00 21.186±0.00 8.967±0.00 16.236±0.00 8.673±0.00 8.498±0.00 24.788±0.00 12.258±0.00 4.292±0.00 9.409±5.01 1.515±0.00 13.217±0.00
ENST00000590898 N/A 3.903±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592674 N/A N/A N/A N/A N/A N/A N/A 9.801±0.00 N/A N/A 7.815±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024270 ENSMUST00000070726 3.969±2.10 2.523±1.20 6.807±0.77 19.914±8.51 3.358±1.00 1.378±0.50 0.877±0.09 1.642±0.12 0.908±0.68 7.250±1.07 0.402±0.22 5.511±2.19 6.869±2.71 19.479±4.41
ENSMUST00000128106 N/A N/A N/A N/A N/A N/A N/A N/A 0.601±0.00 N/A N/A N/A N/A N/A
ENSMUST00000152504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154205 1.708±0.50 1.629±0.10 N/A N/A 2.057±0.76 1.108±0.34 0.360±0.00 0.644±0.16 N/A 2.530±0.07 0.205±0.00 4.474±1.01 N/A N/A
ENSMUSG00000040446 ENSMUST00000046206 4.307±1.61 5.428±1.53 7.014±3.09 10.792±2.57 4.264±2.02 3.661±0.89 6.355±3.16 4.599±1.02 3.018±0.63 5.957±1.07 5.538±1.33 10.126±3.20 2.583±0.62 3.552±1.00
ENSMUSG00000095437 ENSMUST00000116938 N/A N/A 11.036±0.00 10.567±0.00 N/A N/A N/A N/A 14.162±1.21 N/A N/A N/A N/A N/A

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