C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39 (metal ion transporter), member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024270 Slc39a6 10090 - 18:24579881-24603817 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070726 Slc39a6-001 24579881-24603817 protein_coding
  ENSMUST00000128106 Slc39a6-004 24596317-24599420 retained_intron
  ENSMUST00000152504 Slc39a6-003 24601485-24603293 protein_coding
  ENSMUST00000154205 Slc39a6-002 24582308-24603515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070726ENSMUST00000128106ENSMUST00000154205
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070726 3.969±2.10 2.523±1.20 6.807±0.77 19.914±8.51 3.358±1.00 1.378±0.50 0.877±0.09 1.642±0.12 0.908±0.68 7.250±1.07 0.402±0.22 5.511±2.19 6.869±2.71 19.479±4.41
ENSMUST00000128106 N/A N/A N/A N/A N/A N/A N/A N/A 0.601±0.00 N/A N/A N/A N/A N/A
ENSMUST00000154205 1.708±0.50 1.629±0.10 N/A N/A 2.057±0.76 1.108±0.34 0.360±0.00 0.644±0.16 N/A 2.530±0.07 0.205±0.00 4.474±1.01 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W2 CIL_0003W2_0002 CGP 18:24484962-24603817
CIL_00000T CIL_00000T_0002 CGP 18:24579881-24638830

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005385 IEA zinc ion transmembrane transporter activity
GO:0005783 IDA endoplasmic reticulum
GO:0005886 ISS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006882 IEA cellular zinc ion homeostasis
GO:0009986 IEA cell surface
GO:0016020 IEA membrane
GO:0030001 IEA metal ion transport
GO:0031258 ISS lamellipodium membrane
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport
GO:0071577 ISS zinc ion transmembrane transport
GO:0071578 IEA zinc ion transmembrane import

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068143 slc39a6 solute carrier family 39 (zinc transporter), member 6 protein_coding Danio_rerio
ENSG00000141424 SLC39A6 solute carrier family 39 (zinc transporter), member 6 protein_coding Homo_sapiens

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