C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000590986 SLC39A6-004 ENSG00000141424 9606 - 18:36109148-36129381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverMuscleOvaryENST00000590986
Transcript ID Bladder Breast Colon Heart Kidney Liver Muscle Ovary
ENST00000590986 3.573±0.00 2.906±0.00 3.305±0.00 0.774±0.00 2.410±0.00 6.542±0.00 0.809±0.00 2.899±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003W2 CIL_0003W2_0001 CGP 18:35984387-36129385
CIL_00000T CIL_00000T_0001 CGP 18:36108532-36180556

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005385 IDA zinc ion transmembrane transporter activity
GO:0005886 IDA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006882 IDA cellular zinc ion homeostasis
GO:0009986 IDA cell surface
GO:0016020 IEA membrane
GO:0030001 IEA metal ion transport
GO:0031258 IDA lamellipodium membrane
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA:TAS transmembrane transport
GO:0071577 IMP zinc ion transmembrane transport
GO:0071578 IDA zinc ion transmembrane import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070726 Slc39a6-001 protein_coding Mus_musculus 0 2235
ENSMUST00000154205 Slc39a6-002 protein_coding Mus_musculus 0 1437
ENSMUST00000128106 Slc39a6-004 retained_intron Mus_musculus 0 577

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