C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 18 open reading frame 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141452 C18orf8 9606 + 18:23503470-23531807 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269221 C18orf8-001 23503509-23531782 protein_coding
  ENST00000587153 C18orf8-007 23503519-23504722 retained_intron
  ENST00000587690 C18orf8-005 23503520-23515886 nonsense_mediated_decay
  ENST00000589215 C18orf8-003 23503513-23531778 nonsense_mediated_decay
  ENST00000589409 C18orf8-010 23529966-23531779 retained_intron
  ENST00000589860 C18orf8-008 23503531-23519166 nonsense_mediated_decay
  ENST00000590387 C18orf8-009 23527874-23529482 retained_intron
  ENST00000590868 C18orf8-004 23503519-23531776 protein_coding
  ENST00000590870 C18orf8-002 23503533-23531743 nonsense_mediated_decay
  ENST00000591367 C18orf8-013 23529338-23531782 processed_transcript
  ENST00000592119 C18orf8-006 23503535-23509677 protein_coding
  ENST00000592682 C18orf8-011 23529965-23530536 retained_intron
  ENST00000593081 C18orf8-012 23529596-23531782 retained_intron
  ENST00000615148 C18orf8-201 23503470-23531807 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269221ENST00000587690ENST00000589215ENST00000590868ENST00000590870ENST00000592119
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269221 5.125±0.00 N/A 3.056±0.00 6.489±0.00 N/A 4.344±0.00 0.632±0.00 1.511±0.00 3.324±0.44 5.540±0.00 N/A 5.402±1.88 5.693±0.40 13.691±2.87
ENST00000587690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.618±0.00
ENST00000589215 N/A N/A 2.804±0.00 N/A N/A N/A N/A N/A N/A N/A 0.825±0.00 N/A N/A N/A
ENST00000590868 N/A N/A N/A N/A N/A N/A 4.384±0.00 N/A N/A N/A 9.723±0.00 N/A N/A N/A
ENST00000590870 N/A 7.680±0.00 N/A N/A 4.446±0.16 N/A N/A 5.437±3.12 3.672±0.00 N/A N/A N/A N/A N/A
ENST00000592119 N/A N/A N/A N/A N/A N/A N/A 7.496±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WY CIL_0005WY_0001 CGP 18:23452823-23531807
CIL_0005WX CIL_0005WX_0001 CGP 18:23503470-23586898

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029307 C24H18orf8 chromosome 18 open reading frame 8 protein_coding Danio_rerio
ENSMUSG00000024410 3110002H16Rik RIKEN cDNA 3110002H16 gene protein_coding Mus_musculus

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