C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: chromosome 18 open reading frame 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000590870 C18orf8-002 ENSG00000141452 9606 + 18:23503533-23531743 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastKidneyLiverENST00000590870
Transcript ID Adrenal Breast Kidney Liver
ENST00000590870 7.680±0.00 4.446±0.16 5.437±3.12 3.672±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WY CIL_0005WY_0001 CGP 18:23452823-23531807
CIL_0005WX CIL_0005WX_0001 CGP 18:23503470-23586898

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025276 3110002H16Rik-001 protein_coding Mus_musculus 0 2193
ENSMUST00000127123 3110002H16Rik-003 retained_intron Mus_musculus 0 1116
ENSMUST00000126523 3110002H16Rik-002 retained_intron Mus_musculus 0 1000
ENSMUST00000139151 3110002H16Rik-004 retained_intron Mus_musculus 0 673
ENSMUST00000138866 3110002H16Rik-007 nonsense_mediated_decay Mus_musculus 0 505
ENSMUST00000153233 3110002H16Rik-008 retained_intron Mus_musculus 0 444
ENSMUST00000134756 3110002H16Rik-009 retained_intron Mus_musculus 0 374
ENSMUST00000134046 3110002H16Rik-006 protein_coding Mus_musculus 0 359
ENSMUST00000155431 3110002H16Rik-005 retained_intron Mus_musculus 2e-38 165
ENSMUST00000025279 Npc1-001 protein_coding Mus_musculus 1e-24 119

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