C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 3110002H16 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024410 3110002H16Rik 10090 + 18:12168717-12189997 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025276 3110002H16Rik-001 12168717-12189997 protein_coding
  ENSMUST00000126523 3110002H16Rik-002 12168717-12181116 retained_intron
  ENSMUST00000127123 3110002H16Rik-003 12168752-12189974 retained_intron
  ENSMUST00000134046 3110002H16Rik-006 12179570-12184915 protein_coding
  ENSMUST00000134756 3110002H16Rik-009 12188992-12189974 retained_intron
  ENSMUST00000138866 3110002H16Rik-007 12180525-12188220 nonsense_mediated_decay
  ENSMUST00000139151 3110002H16Rik-004 12185431-12189974 retained_intron
  ENSMUST00000153233 3110002H16Rik-008 12185655-12189931 retained_intron
  ENSMUST00000155431 3110002H16Rik-005 12168739-12180571 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025276ENSMUST00000127123ENSMUST00000139151
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025276 20.033±6.26 18.396±1.88 8.256±0.97 8.066±1.58 15.824±1.36 11.618±2.84 10.412±0.48 8.523±0.60 14.822±6.73 13.454±0.28 4.568±0.70 10.981±1.50 9.016±2.12 3.540±0.45
ENSMUST00000127123 N/A N/A N/A N/A N/A 5.724±0.62 N/A N/A 12.768±4.14 N/A N/A N/A N/A N/A
ENSMUST00000139151 N/A N/A N/A 2.717±0.16 N/A N/A N/A N/A 4.084±0.09 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WY CIL_0005WY_0002 CGP 18:12128850-12189997
CIL_0005WX CIL_0005WX_0002 CGP 18:12168717-12236400

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005765 IEA lysosomal membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029307 C24H18orf8 chromosome 18 open reading frame 8 protein_coding Danio_rerio
ENSG00000141452 C18orf8 chromosome 18 open reading frame 8 protein_coding Homo_sapiens

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