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C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0005WY_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000101782-ENSG00000141452 | CGP | 9606 | 18:23452823-23531807  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000101782  (RIOK3)RIO kinase 3 |
ENST00000339486 (RIOK3-001)
|
23452823-23483140 | protein_coding | |
|
ENST00000577250 (RIOK3-011)
|
23477188-23486603 | protein_coding | ||
|
ENST00000577501 (RIOK3-002)
|
23453308-23481500 | protein_coding | ||
|
ENST00000581220 (RIOK3-005)
|
23479007-23483137 | retained_intron | ||
|
ENST00000581302 (RIOK3-003)
|
23453292-23482528 | retained_intron | ||
|
ENST00000581339 (RIOK3-004)
|
23466169-23481365 | retained_intron | ||
|
ENST00000581585 (RIOK3-008)
|
23453287-23481580 | protein_coding | ||
|
ENST00000584052 (RIOK3-009)
|
23453288-23464294 | retained_intron | ||
|
ENST00000584130 (RIOK3-007)
|
23466135-23477203 | nonsense_mediated_decay | ||
|
ENST00000584960 (RIOK3-006)
|
23453287-23463319 | retained_intron | ||
|
ENST00000584992 (RIOK3-010)
|
23464556-23467577 | retained_intron | ||
|
ENSG00000141452 (C18orf8) chromosome 18 open reading frame 8 |
ENST00000269221 (C18orf8-001)
|
23503509-23531782 | protein_coding | |
|
ENST00000587153 (C18orf8-007)
|
23503519-23504722 | retained_intron | ||
|
ENST00000587690 (C18orf8-005)
|
23503520-23515886 | nonsense_mediated_decay | ||
|
ENST00000589215 (C18orf8-003)
|
23503513-23531778 | nonsense_mediated_decay | ||
|
ENST00000589409 (C18orf8-010)
|
23529966-23531779 | retained_intron | ||
|
ENST00000589860 (C18orf8-008)
|
23503531-23519166 | nonsense_mediated_decay | ||
|
ENST00000590387 (C18orf8-009)
|
23527874-23529482 | retained_intron | ||
|
ENST00000590868 (C18orf8-004)
|
23503519-23531776 | protein_coding | ||
|
ENST00000590870 (C18orf8-002)
|
23503533-23531743 | nonsense_mediated_decay | ||
|
ENST00000591367 (C18orf8-013)
|
23529338-23531782 | processed_transcript | ||
|
ENST00000592119 (C18orf8-006)
|
23503535-23509677 | protein_coding | ||
|
ENST00000592682 (C18orf8-011)
|
23529965-23530536 | retained_intron | ||
|
ENST00000593081 (C18orf8-012)
|
23529596-23531782 | retained_intron | ||
|
ENST00000615148 (C18orf8-201)
|
23503470-23531807 | protein_coding | ||
|
ENSG00000141458 (NPC1) Niemann-Pick disease, type C1 |
ENST00000269228 (NPC1-001)
|
23531437-23586898 | protein_coding | |
|
ENST00000540608 (NPC1-004)
|
23539730-23586487 | processed_transcript | ||
|
ENST00000586150 (NPC1-012)
|
23529293-23535700 | protein_coding | ||
|
ENST00000586718 (NPC1-009)
|
23539823-23541372 | retained_intron | ||
|
ENST00000587163 (NPC1-011)
|
23533202-23534560 | retained_intron | ||
|
ENST00000587223 (NPC1-005)
|
23573452-23576947 | processed_transcript | ||
|
ENST00000588867 (NPC1-010)
|
23531722-23535700 | retained_intron | ||
|
ENST00000590301 (NPC1-006)
|
23551546-23554985 | retained_intron | ||
|
ENST00000590723 (NPC1-014)
|
23522315-23533517 | protein_coding | ||
|
ENST00000591051 (NPC1-003)
|
23531946-23560342 | protein_coding | ||
|
ENST00000591075 (NPC1-007)
|
23536742-23539898 | retained_intron | ||
|
ENST00000591107 (NPC1-002)
|
23506184-23535622 | protein_coding | ||
|
ENST00000591955 (NPC1-008)
|
23536700-23538925 | retained_intron | ||
|
ENST00000593280 (NPC1-013)
|
23528207-23533440 | protein_coding | ||
|
ENSG00000199357 (Y_RNA) Y RNA |
ENST00000362487 (Y_RNA.1-221)
|
23456371-23456467 | misc_RNA | |
|
Genome Exciting message Genes Connecting Transcripts Connecting Powered by Dalliance 0.11.11 |
| CIL_0005WY_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000024404-ENSMUSG00000024410 | CGP | 10090 | 18:12128850-12189997 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000024404 (Riok3) RIO kinase 3 |
ENSMUST00000025270 (Riok3-201)
|
12128850-12157367 | protein_coding | |
|
ENSMUSG00000024410 (3110002H16Rik) RIKEN cDNA 3110002H16 gene |
ENSMUST00000025276 (3110002H16Rik-001)
|
12168717-12189997 | protein_coding | |
|
ENSMUST00000126523 (3110002H16Rik-002)
|
12168717-12181116 | retained_intron | ||
|
ENSMUST00000127123 (3110002H16Rik-003)
|
12168752-12189974 | retained_intron | ||
|
ENSMUST00000134046 (3110002H16Rik-006)
|
12179570-12184915 | protein_coding | ||
|
ENSMUST00000134756 (3110002H16Rik-009)
|
12188992-12189974 | retained_intron | ||
|
ENSMUST00000138866 (3110002H16Rik-007)
|
12180525-12188220 | nonsense_mediated_decay | ||
|
ENSMUST00000139151 (3110002H16Rik-004)
|
12185431-12189974 | retained_intron | ||
|
ENSMUST00000153233 (3110002H16Rik-008)
|
12185655-12189931 | retained_intron | ||
|
ENSMUST00000155431 (3110002H16Rik-005)
|
12168739-12180571 | retained_intron | ||
|
ENSMUSG00000024413 (Npc1) Niemann-Pick type C1 |
ENSMUST00000025279 (Npc1-001)
|
12189693-12236400 | protein_coding | |
|
ENSMUST00000133112 (Npc1-002)
|
12217578-12236358 | retained_intron | ||
|
ENSMUST00000144435 (Npc1-005)
|
12221846-12224087 | processed_transcript | ||
|
ENSMUST00000145771 (Npc1-006)
|
12210384-12212554 | processed_transcript | ||
|
ENSMUST00000149211 (Npc1-003)
|
12217994-12236326 | retained_intron | ||
|
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Expression Patterns
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