C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005WY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101782-ENSG00000141452 CGP 9606 18:23452823-23531807
GeneTranscriptPositionBiotype
ENSG00000101782 (RIOK3)
RIO kinase 3 		ENST00000339486 (RIOK3-001) 23452823-23483140 protein_coding
ENST00000577250 (RIOK3-011) 23477188-23486603 protein_coding
ENST00000577501 (RIOK3-002) 23453308-23481500 protein_coding
ENST00000581220 (RIOK3-005) 23479007-23483137 retained_intron
ENST00000581302 (RIOK3-003) 23453292-23482528 retained_intron
ENST00000581339 (RIOK3-004) 23466169-23481365 retained_intron
ENST00000581585 (RIOK3-008) 23453287-23481580 protein_coding
ENST00000584052 (RIOK3-009) 23453288-23464294 retained_intron
ENST00000584130 (RIOK3-007) 23466135-23477203 nonsense_mediated_decay
ENST00000584960 (RIOK3-006) 23453287-23463319 retained_intron
ENST00000584992 (RIOK3-010) 23464556-23467577 retained_intron
ENSG00000141452 (C18orf8)
chromosome 18 open reading frame 8 		ENST00000269221 (C18orf8-001) 23503509-23531782 protein_coding
ENST00000587153 (C18orf8-007) 23503519-23504722 retained_intron
ENST00000587690 (C18orf8-005) 23503520-23515886 nonsense_mediated_decay
ENST00000589215 (C18orf8-003) 23503513-23531778 nonsense_mediated_decay
ENST00000589409 (C18orf8-010) 23529966-23531779 retained_intron
ENST00000589860 (C18orf8-008) 23503531-23519166 nonsense_mediated_decay
ENST00000590387 (C18orf8-009) 23527874-23529482 retained_intron
ENST00000590868 (C18orf8-004) 23503519-23531776 protein_coding
ENST00000590870 (C18orf8-002) 23503533-23531743 nonsense_mediated_decay
ENST00000591367 (C18orf8-013) 23529338-23531782 processed_transcript
ENST00000592119 (C18orf8-006) 23503535-23509677 protein_coding
ENST00000592682 (C18orf8-011) 23529965-23530536 retained_intron
ENST00000593081 (C18orf8-012) 23529596-23531782 retained_intron
ENST00000615148 (C18orf8-201) 23503470-23531807 protein_coding
ENSG00000141458 (NPC1)
Niemann-Pick disease, type C1 		ENST00000269228 (NPC1-001) 23531437-23586898 protein_coding
ENST00000540608 (NPC1-004) 23539730-23586487 processed_transcript
ENST00000586150 (NPC1-012) 23529293-23535700 protein_coding
ENST00000586718 (NPC1-009) 23539823-23541372 retained_intron
ENST00000587163 (NPC1-011) 23533202-23534560 retained_intron
ENST00000587223 (NPC1-005) 23573452-23576947 processed_transcript
ENST00000588867 (NPC1-010) 23531722-23535700 retained_intron
ENST00000590301 (NPC1-006) 23551546-23554985 retained_intron
ENST00000590723 (NPC1-014) 23522315-23533517 protein_coding
ENST00000591051 (NPC1-003) 23531946-23560342 protein_coding
ENST00000591075 (NPC1-007) 23536742-23539898 retained_intron
ENST00000591107 (NPC1-002) 23506184-23535622 protein_coding
ENST00000591955 (NPC1-008) 23536700-23538925 retained_intron
ENST00000593280 (NPC1-013) 23528207-23533440 protein_coding
ENSG00000199357 (Y_RNA)
Y RNA 		ENST00000362487 (Y_RNA.1-221) 23456371-23456467 misc_RNA
CIL_0005WY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024404-ENSMUSG00000024410 CGP 10090 18:12128850-12189997
GeneTranscriptPositionBiotype
ENSMUSG00000024404 (Riok3)
RIO kinase 3 		ENSMUST00000025270 (Riok3-201) 12128850-12157367 protein_coding
ENSMUSG00000024410 (3110002H16Rik)
RIKEN cDNA 3110002H16 gene 		ENSMUST00000025276 (3110002H16Rik-001) 12168717-12189997 protein_coding
ENSMUST00000126523 (3110002H16Rik-002) 12168717-12181116 retained_intron
ENSMUST00000127123 (3110002H16Rik-003) 12168752-12189974 retained_intron
ENSMUST00000134046 (3110002H16Rik-006) 12179570-12184915 protein_coding
ENSMUST00000134756 (3110002H16Rik-009) 12188992-12189974 retained_intron
ENSMUST00000138866 (3110002H16Rik-007) 12180525-12188220 nonsense_mediated_decay
ENSMUST00000139151 (3110002H16Rik-004) 12185431-12189974 retained_intron
ENSMUST00000153233 (3110002H16Rik-008) 12185655-12189931 retained_intron
ENSMUST00000155431 (3110002H16Rik-005) 12168739-12180571 retained_intron
ENSMUSG00000024413 (Npc1)
Niemann-Pick type C1 		ENSMUST00000025279 (Npc1-001) 12189693-12236400 protein_coding
ENSMUST00000133112 (Npc1-002) 12217578-12236358 retained_intron
ENSMUST00000144435 (Npc1-005) 12221846-12224087 processed_transcript
ENSMUST00000145771 (Npc1-006) 12210384-12212554 processed_transcript
ENSMUST00000149211 (Npc1-003) 12217994-12236326 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WY_0001ENSG00000101782ENST00000339486ENST00000577501ENST00000581220ENST00000581302ENST00000581585ENSG00000141452ENST00000269221ENST00000587690ENST00000589215ENST00000590868ENST00000590870ENST00000592119ENSG00000141458ENST00000269228ENST00000586150ENST00000591051ENSG00000199357ENST00000362487CIL_0005WY_0002ENSMUSG00000024404ENSMUST00000025270ENSMUSG00000024410ENSMUST00000025276ENSMUST00000127123ENSMUST00000139151ENSMUSG00000024413ENSMUST00000025279
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101782 ENST00000339486 7.514±0.00 4.706±0.00 N/A 3.763±1.52 3.389±2.54 7.239±4.09 4.992±3.57 5.313±2.85 4.453±3.37 6.190±3.23 9.541±7.16 4.741±1.89 8.936±3.35 6.483±0.00
ENST00000577250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577501 N/A N/A 2.475±0.00 2.144±0.64 3.852±0.00 N/A 0.606±0.00 1.752±0.00 2.516±0.00 4.340±0.43 N/A N/A 2.487±0.00 8.261±0.34
ENST00000581220 3.826±0.00 6.325±0.00 N/A 2.261±0.00 4.489±0.00 N/A N/A 6.771±0.00 1.896±0.00 4.474±0.00 N/A 4.108±0.04 2.976±1.03 N/A
ENST00000581302 N/A 2.449±0.00 0.879±0.00 2.315±0.00 1.969±0.70 2.260±0.00 0.941±0.00 N/A 1.293±0.00 N/A N/A 4.376±0.00 2.269±0.39 N/A
ENST00000581339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581585 4.106±0.00 N/A N/A 1.275±0.00 1.845±0.00 4.627±0.00 3.108±1.92 6.056±0.00 2.035±0.00 2.487±0.00 2.500±0.00 3.029±0.00 N/A 4.525±0.01
ENST00000584052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141452 ENST00000269221 5.125±0.00 N/A 3.056±0.00 6.489±0.00 N/A 4.344±0.00 0.632±0.00 1.511±0.00 3.324±0.44 5.540±0.00 N/A 5.402±1.88 5.693±0.40 13.691±2.87
ENST00000587153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.618±0.00
ENST00000589215 N/A N/A 2.804±0.00 N/A N/A N/A N/A N/A N/A N/A 0.825±0.00 N/A N/A N/A
ENST00000589409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590868 N/A N/A N/A N/A N/A N/A 4.384±0.00 N/A N/A N/A 9.723±0.00 N/A N/A N/A
ENST00000590870 N/A 7.680±0.00 N/A N/A 4.446±0.16 N/A N/A 5.437±3.12 3.672±0.00 N/A N/A N/A N/A N/A
ENST00000591367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592119 N/A N/A N/A N/A N/A N/A N/A 7.496±0.00 N/A N/A N/A N/A N/A N/A
ENST00000592682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141458 ENST00000269228 5.506±0.00 5.682±0.00 1.191±0.00 11.421±7.59 3.122±1.37 6.603±0.00 3.600±0.00 6.164±0.00 2.184±0.56 9.570±6.65 6.610±0.00 7.149±0.17 9.544±3.10 6.012±3.27
ENST00000540608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586150 N/A N/A N/A N/A N/A N/A 2.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000586718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591051 4.975±0.00 5.237±0.00 N/A 10.804±0.00 N/A 5.890±0.00 0.334±0.00 2.207±0.00 2.481±0.00 7.618±4.09 1.419±0.00 3.999±1.37 9.640±3.63 8.220±0.00
ENST00000591075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199357 ENST00000362487 0.393±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024404 ENSMUST00000025270 14.404±1.59 34.692±12.20 19.283±3.45 13.723±3.03 12.199±3.49 11.687±3.56 10.171±1.05 12.733±0.39 15.759±6.83 16.356±1.20 23.932±5.11 12.100±2.75 20.810±4.54 16.649±4.82
ENSMUSG00000024410 ENSMUST00000025276 20.033±6.26 18.396±1.88 8.256±0.97 8.066±1.58 15.824±1.36 11.618±2.84 10.412±0.48 8.523±0.60 14.822±6.73 13.454±0.28 4.568±0.70 10.981±1.50 9.016±2.12 3.540±0.45
ENSMUST00000126523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127123 N/A N/A N/A N/A N/A 5.724±0.62 N/A N/A 12.768±4.14 N/A N/A N/A N/A N/A
ENSMUST00000134046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139151 N/A N/A N/A 2.717±0.16 N/A N/A N/A N/A 4.084±0.09 N/A N/A N/A N/A N/A
ENSMUST00000153233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000024413 ENSMUST00000025279 10.497±3.54 19.128±2.63 7.754±2.06 9.063±1.20 11.447±2.21 13.008±1.19 7.564±0.59 4.778±0.83 11.069±4.98 26.674±2.60 6.835±1.73 14.941±4.40 18.023±4.68 1.534±0.20
ENSMUST00000133112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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