C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 18 open reading frame 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269221 C18orf8-001 ENSG00000141452 9606 + 18:23503509-23531782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000269221
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000269221 5.125±0.00 3.056±0.00 6.489±0.00 4.344±0.00 0.632±0.00 1.511±0.00 3.324±0.44 5.540±0.00 5.402±1.88 5.693±0.40 13.691±2.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WY CIL_0005WY_0001 CGP 18:23452823-23531807
CIL_0005WX CIL_0005WX_0001 CGP 18:23503470-23586898

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025276 3110002H16Rik-001 protein_coding Mus_musculus 0 2292
ENSMUST00000127123 3110002H16Rik-003 retained_intron Mus_musculus 0 1158
ENSMUST00000126523 3110002H16Rik-002 retained_intron Mus_musculus 0 1000
ENSMUST00000139151 3110002H16Rik-004 retained_intron Mus_musculus 0 732
ENSMUST00000138866 3110002H16Rik-007 nonsense_mediated_decay Mus_musculus 0 547
ENSMUST00000153233 3110002H16Rik-008 retained_intron Mus_musculus 0 444
ENSMUST00000134756 3110002H16Rik-009 retained_intron Mus_musculus 0 433
ENSMUST00000134046 3110002H16Rik-006 protein_coding Mus_musculus 0 379
ENSMUST00000025279 Npc1-001 protein_coding Mus_musculus 1.99965e-42 178
ENSMUST00000155431 3110002H16Rik-005 retained_intron Mus_musculus 2e-38 165

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