C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane channel-like 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141524 TMC6 9606 - 17:78110458-78132407 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306591 TMC6-026 78112925-78128630 protein_coding
  ENST00000322914 TMC6-002 78112921-78132407 protein_coding
  ENST00000392467 TMC6-001 78112921-78127020 protein_coding
  ENST00000585849 TMC6-018 78122560-78124350 retained_intron
  ENST00000586126 TMC6-011 78125754-78131397 nonsense_mediated_decay
  ENST00000586271 TMC6-008 78124179-78125889 retained_intron
  ENST00000586697 TMC6-017 78126065-78128755 retained_intron
  ENST00000587480 TMC6-014 78132150-78132402 processed_transcript
  ENST00000588087 TMC6-006 78120177-78128730 retained_intron
  ENST00000588792 TMC6-005 78125923-78128755 retained_intron
  ENST00000589271 TMC6-015 78124558-78128758 protein_coding
  ENST00000589553 TMC6-003 78120177-78128782 protein_coding
  ENST00000589933 TMC6-024 78117316-78118172 retained_intron
  ENST00000590162 TMC6-013 78126196-78126997 retained_intron
  ENST00000590494 TMC6-025 78112922-78113959 retained_intron
  ENST00000590602 TMC6-007 78110458-78128697 protein_coding
  ENST00000590934 TMC6-022 78118971-78120719 processed_transcript
  ENST00000591436 TMC6-009 78113148-78122748 protein_coding
  ENST00000591594 TMC6-020 78125080-78126832 retained_intron
  ENST00000591756 TMC6-023 78119062-78120796 retained_intron
  ENST00000592063 TMC6-016 78125233-78128751 protein_coding
  ENST00000592076 TMC6-021 78112919-78123123 processed_transcript
  ENST00000592594 TMC6-010 78125726-78130683 protein_coding
  ENST00000593044 TMC6-004 78113076-78128772 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartLiverLungOvaryPlacentaENST00000322914ENST00000392467ENST00000590602ENST00000590934
Transcript ID Adipose Breast Heart Liver Lung Ovary Placenta
ENST00000322914 N/A N/A 10.647±0.00 3.778±0.00 12.294±8.80 N/A 13.048±0.76
ENST00000392467 17.245±0.00 N/A N/A N/A N/A 13.441±2.88 4.049±0.00
ENST00000590602 N/A 1.363±0.00 N/A N/A N/A 9.914±0.00 N/A
ENST00000590934 N/A N/A N/A N/A N/A 50.378±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_00009V CIL_00009V_0001 CGP 17:78004168-78132407
CIL_0000A9 CIL_0000A9_0001 CGP 17:78110458-78142968

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006811 IEA ion transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0031965 IDA nuclear membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004875 TMC6 (1 of 2) transmembrane channel-like 6 protein_coding Danio_rerio
ENSDARG00000069787 tmc6a transmembrane channel-like 6a protein_coding Danio_rerio
ENSMUSG00000025572 Tmc6 transmembrane channel-like gene family 6 protein_coding Mus_musculus

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