C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thioredoxin-like 4A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141759 TXNL4A 9606 - 18:79970811-80033949 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269601 TXNL4A-001 79970811-79988593 protein_coding
  ENST00000355491 TXNL4A-008 79973525-79988536 nonsense_mediated_decay
  ENST00000585474 TXNL4A-002 79972875-80033949 protein_coding
  ENST00000585769 TXNL4A-003 79973534-79988581 nonsense_mediated_decay
  ENST00000586295 TXNL4A-005 79977602-79988537 nonsense_mediated_decay
  ENST00000586612 TXNL4A-011 79973542-79986734 processed_transcript
  ENST00000586825 TXNL4A-009 79977598-79988502 nonsense_mediated_decay
  ENST00000588162 TXNL4A-010 79973407-79988541 protein_coding
  ENST00000589926 TXNL4A-006 79994943-80033894 processed_transcript
  ENST00000591711 TXNL4A-007 79977331-79988537 protein_coding
  ENST00000592837 TXNL4A-012 79973566-79977917 protein_coding
  ENST00000592957 TXNL4A-004 79973513-80033891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269601ENST00000355491ENST00000585474ENST00000588162ENST00000592837ENST00000592957
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269601 N/A 3.479±0.00 0.709±0.00 2.435±0.00 1.586±0.53 2.250±0.00 0.603±0.34 0.609±0.00 1.529±0.00 0.496±0.00 0.851±0.00 2.661±1.35 2.205±0.07 3.253±0.00
ENST00000355491 9.332±0.00 N/A N/A N/A 13.998±0.00 N/A 8.521±0.00 N/A 8.747±0.00 N/A 10.168±0.00 36.308±0.00 22.103±9.77 35.173±0.00
ENST00000585474 N/A N/A N/A N/A N/A N/A N/A 1.851±0.00 N/A N/A 2.632±0.00 N/A N/A N/A
ENST00000588162 25.274±0.00 44.228±0.00 N/A 71.898±0.00 41.064±0.00 32.536±0.00 9.387±0.00 27.363±0.00 15.522±0.00 22.862±0.00 14.287±0.00 33.141±0.00 N/A 40.029±8.96
ENST00000592837 N/A N/A N/A N/A N/A 5.022±0.00 2.052±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000592957 15.439±0.00 30.331±0.00 3.645±0.00 9.521±0.00 9.218±6.72 21.028±0.00 6.702±4.31 11.661±8.24 7.685±4.60 11.901±9.46 10.807±0.00 43.246±36.16 70.373±33.69 76.111±45.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0001 VISTA 18:79552100-80156263

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 TAS spliceosomal complex assembly
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IEA:TAS spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0007067 IEA mitotic nuclear division
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0045454 IEA cell redox homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036190 txnl4a thioredoxin-like 4A protein_coding Danio_rerio
ENSMUSG00000057130 Txnl4a thioredoxin-like 4A protein_coding Mus_musculus

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