C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: thioredoxin-like 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269601 TXNL4A-001 ENSG00000141759 9606 - 18:79970811-79988593 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269601
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269601 3.479±0.00 0.709±0.00 2.435±0.00 1.586±0.53 2.250±0.00 0.603±0.34 0.609±0.00 1.529±0.00 0.496±0.00 0.851±0.00 2.661±1.35 2.205±0.07 3.253±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0001 VISTA 18:79552100-80156263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 TAS spliceosomal complex assembly
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005681 IEA:TAS spliceosomal complex
GO:0007067 IEA mitotic nuclear division
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0045454 IEA cell redox homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000145963 Txnl4a-001 protein_coding Mus_musculus 0 562
ENSMUST00000025464 Txnl4a-003 protein_coding Mus_musculus 0 375
ENSMUST00000126360 Txnl4a-002 retained_intron Mus_musculus 0 355
ENSMUST00000130675 Txnl4a-004 processed_transcript Mus_musculus 0 339
ENSMUST00000188583 Ccdc115-002 retained_intron Mus_musculus 0.00000003 66
ENSMUST00000042493 Ccdc115-001 protein_coding Mus_musculus 0.00000003 66
ENSMUST00000156289 Rgs20-006 retained_intron Mus_musculus 0.000005 58

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