C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39 (zinc transporter), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141873 SLC39A3 9606 - 19:2732204-2740152 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269740 SLC39A3-002 2732524-2740152 protein_coding
  ENST00000455372 SLC39A3-001 2734524-2740028 protein_coding
  ENST00000545664 SLC39A3-003 2732204-2740017 protein_coding
  ENST00000589166 SLC39A3-006 2733373-2739475 protein_coding
  ENST00000589363 SLC39A3-004 2733288-2740017 protein_coding
  ENST00000590875 SLC39A3-005 2737278-2740017 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269740ENST00000455372ENST00000545664ENST00000589166ENST00000589363
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269740 8.317±0.00 15.750±0.00 0.307±0.00 7.051±6.19 4.797±2.40 17.992±0.00 8.522±7.03 2.707±2.41 5.833±2.41 6.069±0.74 14.673±4.08 36.420±3.14
ENST00000455372 0.707±0.00 2.393±0.00 0.089±0.00 1.117±0.87 0.640±0.00 1.894±0.00 N/A 0.249±0.04 N/A 0.677±0.00 1.358±0.11 N/A
ENST00000545664 N/A N/A 0.283±0.00 N/A 2.715±0.00 N/A N/A 0.634±0.00 N/A 15.352±14.66 N/A 17.410±0.73
ENST00000589166 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.524±0.00 N/A N/A
ENST00000589363 7.232±0.00 N/A N/A 1.702±0.00 N/A N/A N/A N/A 4.273±0.00 9.748±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RR CIL_0001RR_0001 CGP 19:2732204-2783371

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005385 IEA zinc ion transmembrane transporter activity
GO:0005886 TAS plasma membrane
GO:0006829 IEA zinc ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 TAS:IEA transmembrane transport
GO:0071577 IEA zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000046822 Slc39a3 solute carrier family 39 (zinc transporter), member 3 protein_coding Mus_musculus

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