C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM domain only 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143013 LMO4 9606 + 1:87328468-87348923 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370542 LMO4-002 87331668-87345408 protein_coding
  ENST00000370544 LMO4-001 87328468-87348923 protein_coding
  ENST00000489303 LMO4-004 87331781-87345015 processed_transcript
  ENST00000495705 LMO4-003 87329099-87339632 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370542ENST00000370544ENST00000489303
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370542 27.978±0.00 41.601±0.00 2.751±0.00 50.579±24.80 23.035±16.14 23.296±19.89 7.303±4.45 7.530±4.95 7.708±0.51 16.207±10.20 8.526±5.18 15.435±10.93 51.644±5.07 36.912±26.99
ENST00000370544 3.630±0.00 4.529±0.00 0.837±0.00 16.016±1.42 2.354±1.30 2.542±1.72 1.067±0.70 1.285±0.90 1.323±0.52 2.214±0.87 1.675±0.00 1.466±0.97 4.132±0.30 4.343±3.07
ENST00000489303 N/A N/A N/A 47.944±0.00 N/A N/A 4.661±0.00 5.262±1.93 3.482±0.00 N/A N/A 8.829±0.00 49.835±0.00 17.937±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P2 CIL_0008P2_0001 VISTA 1:87029509-87631054
CIL_0008FW CIL_0008FW_0001 VISTA 1:87037732-87639529
CIL_0008DM CIL_0008DM_0001 VISTA 1:87055938-87657399
CIL_00093Z CIL_00093Z_0001 VISTA 1:87056110-87657227
CIL_0007N8 CIL_0007N8_0001 UCNEbase 1:87150228-88462394
CIL_0007XS CIL_0007XS_0001 VISTA 1:87260180-87861520
CIL_00093Y CIL_00093Y_0001 VISTA 1:87262975-87863695
CIL_00094A CIL_00094A_0001 VISTA 1:87299358-87900847

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001158 IEA enhancer sequence-specific DNA binding
GO:0001843 ISS neural tube closure
GO:0003281 IEA ventricular septum development
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005667 ISS transcription factor complex
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0008134 ISS transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0021514 IEA ventral spinal cord interneuron differentiation
GO:0021522 IEA spinal cord motor neuron differentiation
GO:0021527 IEA spinal cord association neuron differentiation
GO:0031333 IEA negative regulation of protein complex assembly
GO:0042659 IEA regulation of cell fate specification
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048538 IEA thymus development
GO:0050865 IEA regulation of cell activation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054749 lmo4b LIM domain only 4b protein_coding Danio_rerio
ENSMUSG00000028266 Lmo4 LIM domain only 4 protein_coding Mus_musculus

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