C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain only 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370544 LMO4-001 ENSG00000143013 9606 + 1:87328468-87348923 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370544 3.630±0.00 4.529±0.00 0.837±0.00 16.016±1.42 2.354±1.30 2.542±1.72 1.067±0.70 1.285±0.90 1.323±0.52 2.214±0.87 1.675±0.00 1.466±0.97 4.132±0.30 4.343±3.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P2 CIL_0008P2_0001 VISTA 1:87029509-87631054
CIL_0008FW CIL_0008FW_0001 VISTA 1:87037732-87639529
CIL_0008DM CIL_0008DM_0001 VISTA 1:87055938-87657399
CIL_00093Z CIL_00093Z_0001 VISTA 1:87056110-87657227
CIL_0007N8 CIL_0007N8_0001 UCNEbase 1:87150228-88462394
CIL_0007XS CIL_0007XS_0001 VISTA 1:87260180-87861520
CIL_00093Y CIL_00093Y_0001 VISTA 1:87262975-87863695
CIL_00094A CIL_00094A_0001 VISTA 1:87299358-87900847

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001158 IEA enhancer sequence-specific DNA binding
GO:0001843 ISS neural tube closure
GO:0003281 IEA ventricular septum development
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005667 ISS transcription factor complex
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0008134 ISS transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0021514 IEA ventral spinal cord interneuron differentiation
GO:0021522 IEA spinal cord motor neuron differentiation
GO:0021527 IEA spinal cord association neuron differentiation
GO:0031333 IEA negative regulation of protein complex assembly
GO:0042659 IEA regulation of cell fate specification
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048538 IEA thymus development
GO:0050865 IEA regulation of cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120539 Lmo4-001 protein_coding Mus_musculus 0 2119
ENSMUST00000121796 Lmo4-002 protein_coding Mus_musculus 0 1727
ENSMUST00000121112 Lmo4-003 protein_coding Mus_musculus 0 1576
ENSMUST00000134961 Lmo4-004 retained_intron Mus_musculus 0 732
ENSMUST00000148128 Lmo4-005 retained_intron Mus_musculus 0 701
ENSDART00000148748 lmo4b-002 protein_coding Danio_rerio 0 414
ENSDART00000076997 lmo4b-001 protein_coding Danio_rerio 0 414
ENSMUST00000124891 Lmo4-006 retained_intron Mus_musculus 0 401

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