C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain only 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489303 LMO4-004 ENSG00000143013 9606 + 1:87331781-87345015 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverOvaryPlacentaTestisENST00000489303
Transcript ID Brain Heart Kidney Liver Ovary Placenta Testis
ENST00000489303 47.944±0.00 4.661±0.00 5.262±1.93 3.482±0.00 8.829±0.00 49.835±0.00 17.937±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P2 CIL_0008P2_0001 VISTA 1:87029509-87631054
CIL_0008FW CIL_0008FW_0001 VISTA 1:87037732-87639529
CIL_0008DM CIL_0008DM_0001 VISTA 1:87055938-87657399
CIL_00093Z CIL_00093Z_0001 VISTA 1:87056110-87657227
CIL_0007N8 CIL_0007N8_0001 UCNEbase 1:87150228-88462394
CIL_0007XS CIL_0007XS_0001 VISTA 1:87260180-87861520
CIL_00093Y CIL_00093Y_0001 VISTA 1:87262975-87863695
CIL_00094A CIL_00094A_0001 VISTA 1:87299358-87900847

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121112 Lmo4-003 protein_coding Mus_musculus 0 1205
ENSMUST00000120539 Lmo4-001 protein_coding Mus_musculus 0 1077
ENSMUST00000121796 Lmo4-002 protein_coding Mus_musculus 0 1070
ENSMUST00000148128 Lmo4-005 retained_intron Mus_musculus 0 676
ENSDART00000148748 lmo4b-002 protein_coding Danio_rerio 0 414
ENSDART00000076997 lmo4b-001 protein_coding Danio_rerio 0 414
ENSMUST00000134961 Lmo4-004 retained_intron Mus_musculus 0 409
ENSMUST00000124891 Lmo4-006 retained_intron Mus_musculus 0 401

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