C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007XS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1161 VISTA 9606 1:87260180-87861520
GeneTranscriptPositionBiotype
ENSG00000143013 (LMO4)
LIM domain only 4 		ENST00000370542 (LMO4-002) 87331668-87345408 protein_coding
ENST00000370544 (LMO4-001) 87328468-87348923 protein_coding
ENST00000489303 (LMO4-004) 87331781-87345015 processed_transcript
ENST00000495705 (LMO4-003) 87329099-87339632 processed_transcript
ENSG00000227290 (LINC01364)
long intergenic non-protein coding RNA 1364 		ENST00000452509 (LINC01364-001) 87353524-87371655 lincRNA
ENSG00000279778 (RP11-60A14.1)
 ENST00000623157 (RP11-60A14.1-001) 87805286-87808372 TEC
CIL_0007XS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1161 VISTA 10090 3:143685055-144286394
GeneTranscriptPositionBiotype
ENSMUSG00000028266 (Lmo4)
LIM domain only 4 		ENSMUST00000120539 (Lmo4-001) 144188530-144205220 protein_coding
ENSMUST00000121112 (Lmo4-003) 144188632-144202332 protein_coding
ENSMUST00000121796 (Lmo4-002) 144188530-144202317 protein_coding
ENSMUST00000124891 (Lmo4-006) 144201623-144202300 retained_intron
ENSMUST00000134961 (Lmo4-004) 144200783-144205180 retained_intron
ENSMUST00000148128 (Lmo4-005) 144189062-144194818 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007XS_0001ENSG00000143013ENST00000370542ENST00000370544ENST00000489303ENST00000495705ENSG00000227290ENST00000452509ENSG00000279778ENST00000623157CIL_0007XS_0002ENSMUSG00000028266ENSMUST00000120539ENSMUST00000121112ENSMUST00000121796ENSMUST00000124891ENSMUST00000134961ENSMUST00000148128
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007XS_0001ENSG00000143013ENST00000370542ENST00000370544ENST00000489303ENSG00000227290ENST00000452509ENSG00000279778ENST00000623157CIL_0007XS_0002ENSMUSG00000028266ENSMUST00000120539ENSMUST00000121112ENSMUST00000121796ENSMUST00000148128
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143013 ENST00000370542 27.978±0.00 41.601±0.00 2.751±0.00 50.579±24.80 23.035±16.14 23.296±19.89 7.303±4.45 7.530±4.95 7.708±0.51 16.207±10.20 8.526±5.18 15.435±10.93 51.644±5.07 36.912±26.99
ENST00000370544 3.630±0.00 4.529±0.00 0.837±0.00 16.016±1.42 2.354±1.30 2.542±1.72 1.067±0.70 1.285±0.90 1.323±0.52 2.214±0.87 1.675±0.00 1.466±0.97 4.132±0.30 4.343±3.07
ENST00000489303 N/A N/A N/A 47.944±0.00 N/A N/A 4.661±0.00 5.262±1.93 3.482±0.00 N/A N/A 8.829±0.00 49.835±0.00 17.937±0.00
ENST00000495705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227290 ENST00000452509 N/A N/A N/A 0.249±0.02 N/A 0.276±0.00 0.115±0.00 N/A N/A 0.085±0.00 N/A N/A N/A 1.886±0.16
ENSG00000279778 ENST00000623157 0.164±0.00 0.073±0.00 0.041±0.00 0.061±0.02 0.062±0.05 0.032±0.00 0.020±0.00 0.009±0.00 N/A 0.083±0.00 N/A 0.079±0.02 0.060±0.02 0.031±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028266 ENSMUST00000120539 19.553±7.55 35.040±6.58 54.415±0.00 19.649±6.43 15.750±5.84 11.277±1.47 3.536±1.00 13.602±4.02 5.800±5.18 12.496±1.22 5.350±1.42 19.151±6.16 4.006±3.38 1.431±0.76
ENSMUST00000121112 N/A N/A N/A 6.490±0.00 13.199±0.00 N/A 3.361±0.00 N/A N/A 5.887±0.73 3.039±0.45 3.776±2.06 1.043±0.17 N/A
ENSMUST00000121796 48.538±22.92 46.103±9.65 57.334±0.00 16.284±8.05 35.879±5.57 13.500±3.35 12.799±2.44 40.969±4.19 6.121±1.39 30.711±5.64 3.325±1.92 24.258±6.42 4.531±1.97 4.126±1.88
ENSMUST00000124891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148128 N/A N/A N/A N/A 10.593±0.00 N/A N/A N/A N/A N/A N/A 12.248±0.15 3.990±0.00 N/A

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