C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain only 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370542 LMO4-002 ENSG00000143013 9606 + 1:87331668-87345408 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370542
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370542 27.978±0.00 41.601±0.00 2.751±0.00 50.579±24.80 23.035±16.14 23.296±19.89 7.303±4.45 7.530±4.95 7.708±0.51 16.207±10.20 8.526±5.18 15.435±10.93 51.644±5.07 36.912±26.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P2 CIL_0008P2_0001 VISTA 1:87029509-87631054
CIL_0008FW CIL_0008FW_0001 VISTA 1:87037732-87639529
CIL_0008DM CIL_0008DM_0001 VISTA 1:87055938-87657399
CIL_00093Z CIL_00093Z_0001 VISTA 1:87056110-87657227
CIL_0007N8 CIL_0007N8_0001 UCNEbase 1:87150228-88462394
CIL_0007XS CIL_0007XS_0001 VISTA 1:87260180-87861520
CIL_00093Y CIL_00093Y_0001 VISTA 1:87262975-87863695
CIL_00094A CIL_00094A_0001 VISTA 1:87299358-87900847

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 ISS neural tube closure
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005667 ISS transcription factor complex
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0008134 ISS transcription factor binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121796 Lmo4-002 protein_coding Mus_musculus 0 1604
ENSMUST00000121112 Lmo4-003 protein_coding Mus_musculus 0 1517
ENSMUST00000120539 Lmo4-001 protein_coding Mus_musculus 0 1517
ENSMUST00000148128 Lmo4-005 retained_intron Mus_musculus 0 701
ENSMUST00000124891 Lmo4-006 retained_intron Mus_musculus 0 481
ENSDART00000148748 lmo4b-002 protein_coding Danio_rerio 0 414
ENSDART00000076997 lmo4b-001 protein_coding Danio_rerio 0 414
ENSMUST00000134961 Lmo4-004 retained_intron Mus_musculus 0 401

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