C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoid X receptor, gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143171 RXRG 9606 - 1:165400917-165445355 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359842 RXRG-001 165400917-165445196 protein_coding
  ENST00000465764 RXRG-003 165436928-165445172 processed_transcript
  ENST00000470566 RXRG-002 165410750-165424972 processed_transcript
  ENST00000619224 RXRG-201 165400923-165445355 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359842ENST00000465764ENST00000470566ENST00000619224
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359842 N/A 0.060±0.00 1.337±0.78 0.355±0.00 0.568±0.30 0.677±0.04 0.018±0.00 0.125±0.07 0.378±0.09 4.026±1.43 0.425±0.10 0.682±0.18 0.632±0.05
ENST00000465764 0.076±0.00 N/A 1.116±0.00 N/A N/A N/A N/A N/A 0.380±0.00 N/A N/A N/A N/A
ENST00000470566 N/A N/A 0.833±0.00 0.369±0.26 0.543±0.00 0.488±0.00 0.074±0.00 0.274±0.25 0.425±0.21 N/A 0.362±0.07 0.672±0.00 1.820±0.00
ENST00000619224 N/A N/A 0.859±0.00 0.275±0.00 N/A N/A N/A N/A 0.209±0.00 2.234±0.00 0.119±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004886 IEA 9-cis retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007422 IEA peripheral nervous system development
GO:0007507 IEA heart development
GO:0007519 IEA skeletal muscle tissue development
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0014070 IEA response to organic cyclic compound
GO:0030182 IEA neuron differentiation
GO:0031641 IEA regulation of myelination
GO:0032526 IEA response to retinoic acid
GO:0032870 IEA cellular response to hormone stimulus
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0051289 IEA protein homotetramerization
GO:1901522 IEA positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004697 rxrgb retinoid X receptor, gamma b protein_coding Danio_rerio
ENSMUSG00000015843 Rxrg retinoid X receptor gamma protein_coding Mus_musculus

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