C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoid X receptor gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015843 Rxrg 10090 + 1:167598384-167639623 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015987 Rxrg-001 167598384-167639623 protein_coding
  ENSMUST00000111380 Rxrg-004 167618309-167639621 protein_coding
  ENSMUST00000111384 Rxrg-003 167598480-167639618 protein_coding
  ENSMUST00000111386 Rxrg-002 167598460-167639424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015987ENSMUST00000111380ENSMUST00000111384ENSMUST00000111386
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015987 N/A N/A 0.634±0.04 2.887±0.53 1.540±0.33 0.277±0.06 N/A N/A 0.039±0.02 0.441±0.00 6.984±1.74 0.244±0.18 0.025±0.00 N/A
ENSMUST00000111380 6.424±3.44 1.695±0.53 0.230±0.05 4.712±0.00 7.424±3.41 0.146±0.00 34.383±3.98 0.982±0.19 3.529±2.58 1.079±0.49 19.941±3.15 0.404±0.18 0.067±0.02 0.285±0.25
ENSMUST00000111384 N/A N/A N/A 1.948±0.00 N/A 0.239±0.08 N/A N/A 0.038±0.02 N/A 4.295±1.20 N/A N/A N/A
ENSMUST00000111386 N/A 0.544±0.09 0.325±0.10 0.852±0.35 N/A 0.186±0.05 N/A 0.293±0.03 0.034±0.03 0.269±0.12 3.375±0.00 0.229±0.06 0.049±0.01 0.214±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MM CIL_0005MM_0002 CGP 1:167598384-167848741

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003707 IEA steroid hormone receptor activity
GO:0004886 IDA 9-cis retinoic acid receptor activity
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0007422 IEA peripheral nervous system development
GO:0007507 IEA heart development
GO:0007519 IEA skeletal muscle tissue development
GO:0008270 IEA zinc ion binding
GO:0014070 IEA response to organic cyclic compound
GO:0030182 IEA neuron differentiation
GO:0031641 IEA regulation of myelination
GO:0032526 IEA response to retinoic acid
GO:0032870 IEA cellular response to hormone stimulus
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0051289 IDA protein homotetramerization
GO:1901522 IDA positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004697 rxrgb retinoid X receptor, gamma b protein_coding Danio_rerio
ENSG00000143171 RXRG retinoid X receptor, gamma protein_coding Homo_sapiens

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