C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359842 RXRG-001 ENSG00000143171 9606 - 1:165400917-165445196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359842
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359842 0.060±0.00 1.337±0.78 0.355±0.00 0.568±0.30 0.677±0.04 0.018±0.00 0.125±0.07 0.378±0.09 4.026±1.43 0.425±0.10 0.682±0.18 0.632±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004886 IEA 9-cis retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007422 IEA peripheral nervous system development
GO:0007507 IEA heart development
GO:0007519 IEA skeletal muscle tissue development
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0014070 IEA response to organic cyclic compound
GO:0030182 IEA neuron differentiation
GO:0031641 IEA regulation of myelination
GO:0032526 IEA response to retinoic acid
GO:0032870 IEA cellular response to hormone stimulus
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0051289 IEA protein homotetramerization
GO:1901522 IEA positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111384 Rxrg-003 protein_coding Mus_musculus 0 2361
ENSMUST00000015987 Rxrg-001 protein_coding Mus_musculus 0 2148
ENSMUST00000111386 Rxrg-002 protein_coding Mus_musculus 0 1975
ENSMUST00000111380 Rxrg-004 protein_coding Mus_musculus 0 1725
ENSMUST00000116612 Rxrb-003 protein_coding Mus_musculus 0 366
ENSMUST00000174299 Rxrb-010 protein_coding Mus_musculus 0 366
ENSMUST00000173354 Rxrb-002 protein_coding Mus_musculus 0 322
ENSMUST00000044858 Rxrb-001 protein_coding Mus_musculus 0 322
ENSMUST00000174578 Rxrb-009 retained_intron Mus_musculus 0 246

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