C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane and coiled-coil domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580248 TMCO1-006 ENSG00000143183 9606 - 1:165727306-165827755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverMuscleTestisENST00000580248
Transcript ID Brain Breast Colon Kidney Liver Muscle Testis
ENST00000580248 5.036±0.00 5.831±0.00 6.076±0.00 11.878±0.00 11.420±0.00 2.735±0.00 12.258±2.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027Y CIL_00027Y_0002 CGP 1:165662216-165827755
CIL_00027V CIL_00027V_0002 CGP 1:165724293-165911618

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097473 Tmco1-201 protein_coding Mus_musculus 0 688
ENSMUST00000053686 Uck2-202 protein_coding Mus_musculus 1.99965e-42 178
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0000002 62

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