C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear VCP-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143748 NVL 9606 - 1:224227334-224330387 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000281701 NVL-001 224227334-224330387 protein_coding
  ENST00000340871 NVL-017 224227454-224330139 protein_coding
  ENST00000391875 NVL-002 224227334-224330170 protein_coding
  ENST00000436927 NVL-006 224304736-224330128 protein_coding
  ENST00000461466 NVL-020 224307993-224330179 processed_transcript
  ENST00000461546 NVL-019 224308183-224330179 protein_coding
  ENST00000462893 NVL-026 224289185-224294341 retained_intron
  ENST00000467882 NVL-014 224289682-224330137 nonsense_mediated_decay
  ENST00000468088 NVL-021 224317694-224330172 processed_transcript
  ENST00000468673 NVL-016 224312540-224330148 retained_intron
  ENST00000469075 NVL-018 224227369-224330138 protein_coding
  ENST00000469968 NVL-003 224227334-224330121 protein_coding
  ENST00000470903 NVL-004 224307986-224330187 processed_transcript
  ENST00000470989 NVL-022 224305084-224330168 nonsense_mediated_decay
  ENST00000481213 NVL-010 224227334-224233289 nonsense_mediated_decay
  ENST00000482491 NVL-201 224227337-224330189 protein_coding
  ENST00000483094 NVL-011 224227334-224236582 processed_transcript
  ENST00000487758 NVL-009 224312727-224330132 retained_intron
  ENST00000488718 NVL-024 224304735-224330138 protein_coding
  ENST00000489194 NVL-012 224227334-224268133 processed_transcript
  ENST00000492281 NVL-023 224304735-224330139 protein_coding
  ENST00000493060 NVL-015 224227334-224236647 retained_intron
  ENST00000496393 NVL-013 224231266-224269915 processed_transcript
  ENST00000498767 NVL-025 224308008-224312124 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000281701ENST00000340871ENST00000391875ENST00000436927ENST00000461466ENST00000461546ENST00000467882ENST00000468673ENST00000469075ENST00000469968ENST00000482491ENST00000488718ENST00000489194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000281701 N/A N/A 0.287±0.00 N/A N/A N/A 0.266±0.00 N/A N/A 0.471±0.00 N/A 0.798±0.00 4.598±0.00 2.948±0.00
ENST00000340871 N/A N/A N/A 1.128±0.00 N/A 0.445±0.00 0.584±0.00 0.784±0.53 0.342±0.00 N/A N/A N/A N/A 1.109±0.00
ENST00000391875 1.742±0.00 3.341±0.00 N/A 0.555±0.08 3.506±0.00 1.342±0.00 0.420±0.28 1.974±0.00 0.494±0.02 N/A 0.401±0.00 3.130±1.35 2.763±0.56 2.116±0.00
ENST00000436927 N/A N/A N/A N/A N/A N/A N/A N/A 1.411±0.00 N/A N/A N/A N/A N/A
ENST00000461466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.535±0.00 N/A N/A N/A
ENST00000461546 N/A N/A N/A 2.479±0.00 N/A N/A N/A N/A N/A 3.066±0.00 N/A N/A N/A 6.270±0.00
ENST00000467882 N/A N/A 0.601±0.00 N/A 2.423±0.00 N/A 0.158±0.00 N/A N/A 1.308±0.00 0.278±0.00 2.174±0.00 N/A N/A
ENST00000468673 N/A N/A 1.092±0.00 N/A N/A N/A 0.429±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000469075 N/A N/A N/A N/A N/A 2.410±0.00 N/A N/A 1.177±0.00 0.872±0.00 N/A 4.343±0.00 2.978±1.76 1.674±0.77
ENST00000469968 N/A N/A N/A N/A N/A N/A N/A N/A 0.473±0.00 N/A N/A N/A N/A 0.959±0.00
ENST00000482491 0.522±0.00 N/A N/A 0.816±0.00 0.608±0.00 N/A N/A 0.233±0.00 0.399±0.00 0.540±0.00 N/A 1.803±0.59 1.661±0.00 N/A
ENST00000488718 N/A N/A N/A N/A N/A N/A N/A 3.951±0.00 N/A N/A N/A N/A N/A N/A
ENST00000489194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.326±0.65 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000BX CIL_0000BX_0002 CGP 1:224175756-224330387
CIL_0008IP CIL_0008IP_0001 VISTA 1:224201914-224806293
CIL_0005S3 CIL_0005S3_0001 CGP 1:224227334-224379459

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0009378 IEA four-way junction helicase activity
GO:0016020 IDA membrane
GO:0016301 IEA kinase activity
GO:0016887 IEA ATPase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025605 nvl nuclear VCP-like protein_coding Danio_rerio
ENSMUSG00000026516 Nvl nuclear VCP-like protein_coding Mus_musculus

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