C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000BX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007347-ENSDARG00000025605 CGP 7955 13:373956-425759
GeneTranscriptPositionBiotype
ENSDARG00000007347 (degs1)
degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) 		ENSDART00000013007 (degs1-001) 373956-386569 protein_coding
ENSDART00000127095 (degs1-201) 374148-393703 protein_coding
ENSDART00000137494 (degs1-002) 374045-382865 nonsense_mediated_decay
ENSDARG00000025605 (nvl)
nuclear VCP-like 		ENSDART00000038315 (nvl-001) 387984-404969 protein_coding
ENSDART00000136881 (nvl-002) 404891-425759 processed_transcript
ENSDARG00000094249 (wu:fc17b08)
wu:fc17b08 		ENSDART00000141701 (wu:fc17b08-002) 406184-415842 retained_intron
ENSDART00000147909 (wu:fc17b08-001) 406179-417379 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000BX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143753-ENSG00000143748 CGP 9606 1:224175756-224330387
GeneTranscriptPositionBiotype
ENSG00000143748 (NVL)
nuclear VCP-like 		ENST00000281701 (NVL-001) 224227334-224330387 protein_coding
ENST00000340871 (NVL-017) 224227454-224330139 protein_coding
ENST00000391875 (NVL-002) 224227334-224330170 protein_coding
ENST00000436927 (NVL-006) 224304736-224330128 protein_coding
ENST00000461466 (NVL-020) 224307993-224330179 processed_transcript
ENST00000461546 (NVL-019) 224308183-224330179 protein_coding
ENST00000462893 (NVL-026) 224289185-224294341 retained_intron
ENST00000467882 (NVL-014) 224289682-224330137 nonsense_mediated_decay
ENST00000468088 (NVL-021) 224317694-224330172 processed_transcript
ENST00000468673 (NVL-016) 224312540-224330148 retained_intron
ENST00000469075 (NVL-018) 224227369-224330138 protein_coding
ENST00000469968 (NVL-003) 224227334-224330121 protein_coding
ENST00000470903 (NVL-004) 224307986-224330187 processed_transcript
ENST00000470989 (NVL-022) 224305084-224330168 nonsense_mediated_decay
ENST00000481213 (NVL-010) 224227334-224233289 nonsense_mediated_decay
ENST00000482491 (NVL-201) 224227337-224330189 protein_coding
ENST00000483094 (NVL-011) 224227334-224236582 processed_transcript
ENST00000487758 (NVL-009) 224312727-224330132 retained_intron
ENST00000488718 (NVL-024) 224304735-224330138 protein_coding
ENST00000489194 (NVL-012) 224227334-224268133 processed_transcript
ENST00000492281 (NVL-023) 224304735-224330139 protein_coding
ENST00000493060 (NVL-015) 224227334-224236647 retained_intron
ENST00000496393 (NVL-013) 224231266-224269915 processed_transcript
ENST00000498767 (NVL-025) 224308008-224312124 retained_intron
ENSG00000143753 (DEGS1)
delta(4)-desaturase, sphingolipid 1 		ENST00000323699 (DEGS1-001) 224183171-224193441 protein_coding
ENST00000391877 (DEGS1-201) 224183266-224193157 protein_coding
ENST00000415210 (DEGS1-004) 224175756-224192353 protein_coding
ENST00000465848 (DEGS1-003) 224183675-224190052 processed_transcript
ENST00000498813 (DEGS1-002) 224190136-224192440 processed_transcript
ENSG00000201898 (SNORA72)
Small nucleolar RNA SNORA72 		ENST00000365028 (SNORA72.1-202) 224179641-224179767 snoRNA
ENSG00000221406 (MIR320B2)
microRNA 320b-2 		ENST00000408479 (MIR320B2-201) 224257004-224257141 miRNA
ENSG00000229742 (RP11-365O16.5)
 ENST00000441469 (RP11-365O16.5-001) 224297646-224298600 processed_pseudogene
ENSG00000232628 (RP11-365O16.3)
 ENST00000436706 (RP11-365O16.3-001) 224208747-224213279 sense_intronic
ENST00000453760 (RP11-365O16.3-002) 224208747-224210412 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0000BX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038768-ENSMUSG00000026516 CGP 10090 1:181051237-181144157
GeneTranscriptPositionBiotype
ENSMUSG00000026516 (Nvl)
nuclear VCP-like 		ENSMUST00000027797 (Nvl-201) 181093423-181144157 protein_coding
ENSMUSG00000038768 (9130409I23Rik)
RIKEN cDNA 9130409I23 gene 		ENSMUST00000036819 (9130409I23Rik-201) 181051237-181060667 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000BX_0001ENSDARG00000007347ENSDART00000013007ENSDART00000127095ENSDART00000137494ENSDARG00000025605ENSDART00000038315ENSDART00000136881ENSDARG00000094249ENSDART00000141701ENSDART00000147909CIL_0000BX_0002ENSG00000143748ENST00000281701ENST00000340871ENST00000391875ENST00000436927ENST00000461466ENST00000461546ENST00000462893ENST00000467882ENST00000468088ENST00000468673ENST00000469075ENST00000469968ENST00000470903ENST00000470989ENST00000481213ENST00000482491ENST00000483094ENST00000487758ENST00000488718ENST00000489194ENST00000492281ENST00000493060ENST00000496393ENST00000498767ENSG00000143753ENST00000323699ENST00000391877ENST00000415210ENST00000465848ENST00000498813ENSG00000201898ENST00000365028ENSG00000221406ENST00000408479ENSG00000229742ENST00000441469ENSG00000232628ENST00000436706ENST00000453760CIL_0000BX_0003ENSMUSG00000026516ENSMUST00000027797ENSMUSG00000038768ENSMUST00000036819
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000BX_0001ENSDARG00000007347ENSDART00000013007ENSDART00000127095ENSDART00000137494ENSDARG00000025605ENSDART00000038315ENSDART00000136881ENSDARG00000094249ENSDART00000141701ENSDART00000147909CIL_0000BX_0002ENSG00000143748ENST00000281701ENST00000340871ENST00000391875ENST00000436927ENST00000461466ENST00000461546ENST00000467882ENST00000468673ENST00000469075ENST00000469968ENST00000482491ENST00000488718ENST00000489194ENSG00000143753ENST00000323699ENST00000391877ENST00000415210ENSG00000201898ENST00000365028ENSG00000221406ENST00000408479ENSG00000229742ENST00000441469ENSG00000232628ENST00000436706ENST00000453760CIL_0000BX_0003ENSMUSG00000026516ENSMUST00000027797ENSMUSG00000038768ENSMUST00000036819
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007347 ENSDART00000013007 N/A N/A N/A 18.016±12.79 N/A N/A 21.351±0.39 23.144±0.00 8.474±0.00 N/A 14.532±0.00 N/A N/A N/A
ENSDART00000127095 N/A N/A N/A N/A N/A N/A N/A N/A 4.832±0.00 N/A 6.536±0.00 N/A N/A N/A
ENSDART00000137494 N/A N/A N/A N/A N/A N/A N/A 3.093±2.44 N/A N/A N/A N/A N/A N/A
ENSDARG00000025605 ENSDART00000038315 N/A N/A N/A N/A N/A N/A 2.210±0.00 1.090±0.00 3.209±0.00 N/A 2.595±0.00 N/A N/A N/A
ENSDART00000136881 N/A N/A N/A N/A N/A N/A N/A 2.187±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000094249 ENSDART00000141701 N/A N/A N/A N/A N/A N/A 1.392±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147909 N/A N/A N/A N/A N/A N/A N/A 0.424±0.00 N/A N/A 1.334±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143748 ENST00000281701 N/A N/A 0.287±0.00 N/A N/A N/A 0.266±0.00 N/A N/A 0.471±0.00 N/A 0.798±0.00 4.598±0.00 2.948±0.00
ENST00000340871 N/A N/A N/A 1.128±0.00 N/A 0.445±0.00 0.584±0.00 0.784±0.53 0.342±0.00 N/A N/A N/A N/A 1.109±0.00
ENST00000391875 1.742±0.00 3.341±0.00 N/A 0.555±0.08 3.506±0.00 1.342±0.00 0.420±0.28 1.974±0.00 0.494±0.02 N/A 0.401±0.00 3.130±1.35 2.763±0.56 2.116±0.00
ENST00000436927 N/A N/A N/A N/A N/A N/A N/A N/A 1.411±0.00 N/A N/A N/A N/A N/A
ENST00000461466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.535±0.00 N/A N/A N/A
ENST00000461546 N/A N/A N/A 2.479±0.00 N/A N/A N/A N/A N/A 3.066±0.00 N/A N/A N/A 6.270±0.00
ENST00000462893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467882 N/A N/A 0.601±0.00 N/A 2.423±0.00 N/A 0.158±0.00 N/A N/A 1.308±0.00 0.278±0.00 2.174±0.00 N/A N/A
ENST00000468088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468673 N/A N/A 1.092±0.00 N/A N/A N/A 0.429±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000469075 N/A N/A N/A N/A N/A 2.410±0.00 N/A N/A 1.177±0.00 0.872±0.00 N/A 4.343±0.00 2.978±1.76 1.674±0.77
ENST00000469968 N/A N/A N/A N/A N/A N/A N/A N/A 0.473±0.00 N/A N/A N/A N/A 0.959±0.00
ENST00000470903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482491 0.522±0.00 N/A N/A 0.816±0.00 0.608±0.00 N/A N/A 0.233±0.00 0.399±0.00 0.540±0.00 N/A 1.803±0.59 1.661±0.00 N/A
ENST00000483094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488718 N/A N/A N/A N/A N/A N/A N/A 3.951±0.00 N/A N/A N/A N/A N/A N/A
ENST00000489194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.326±0.65 N/A N/A N/A
ENST00000492281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000143753 ENST00000323699 15.696±0.00 19.286±0.00 1.607±0.00 11.199±6.66 10.769±7.84 6.911±6.19 6.109±4.64 16.793±0.00 4.770±1.40 9.408±6.58 2.969±0.00 8.461±5.48 49.653±32.71 11.798±0.00
ENST00000391877 8.258±0.00 5.997±0.00 N/A 5.689±3.34 8.300±3.55 4.936±1.63 5.853±0.00 2.425±1.04 3.669±1.62 8.694±5.10 2.345±0.14 4.683±0.62 28.360±7.00 6.704±0.25
ENST00000415210 N/A N/A 6.724±0.00 6.824±0.00 N/A 2.464±0.00 2.827±0.00 2.953±0.00 4.586±0.00 7.170±0.00 1.344±0.00 4.915±0.00 N/A N/A
ENST00000465848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201898 ENST00000365028 N/A 0.254±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221406 ENST00000408479 0.145±0.00 0.733±0.00 N/A 1.093±0.00 N/A 0.528±0.00 N/A N/A N/A N/A N/A 3.995±0.00 2.058±0.00 1.809±1.40
ENSG00000229742 ENST00000441469 N/A 0.217±0.00 N/A N/A N/A 0.098±0.07 0.025±0.00 N/A 0.025±0.00 0.102±0.00 0.195±0.00 N/A N/A 0.096±0.00
ENSG00000232628 ENST00000436706 N/A N/A N/A 0.102±0.03 N/A N/A N/A N/A 0.082±0.00 N/A N/A 0.456±0.00 N/A N/A
ENST00000453760 0.298±0.00 1.389±0.00 N/A 0.537±0.01 0.121±0.00 1.005±0.71 0.283±0.00 1.486±1.18 0.771±0.74 0.457±0.34 0.100±0.00 0.388±0.00 N/A 0.675±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026516 ENSMUST00000027797 3.122±1.15 1.741±0.54 6.872±2.04 11.575±3.96 2.943±0.32 1.960±0.74 1.742±0.35 2.133±1.24 6.218±5.51 2.440±1.23 1.876±0.58 7.273±7.30 14.846±10.73 4.637±1.98
ENSMUSG00000038768 ENSMUST00000036819 0.060±0.01 N/A N/A 0.020±0.00 N/A N/A N/A 0.075±0.00 1.840±2.18 N/A N/A 0.149±0.07 0.035±0.02 0.018±0.00

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