C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cornichon family AMPA receptor auxiliary protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143786 CNIH3 9606 + 1:224434660-224740549 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272133 CNIH3-001 224616293-224740549 protein_coding
  ENST00000470602 CNIH3-009 224515862-224536981 processed_transcript
  ENST00000470788 CNIH3-014 224529222-224537582 processed_transcript
  ENST00000471578 CNIH3-007 224434660-224588616 processed_transcript
  ENST00000478120 CNIH3-003 224529196-224739337 processed_transcript
  ENST00000479227 CNIH3-013 224587140-224588604 processed_transcript
  ENST00000481095 CNIH3-004 224529218-224734706 processed_transcript
  ENST00000483512 CNIH3-011 224434912-224521555 processed_transcript
  ENST00000489556 CNIH3-005 224529223-224588492 processed_transcript
  ENST00000492470 CNIH3-010 224565365-224588555 processed_transcript
  ENST00000496277 CNIH3-006 224529310-224681026 processed_transcript
  ENST00000496372 CNIH3-012 224513688-224521221 processed_transcript
  ENST00000498126 CNIH3-008 224434925-224521222 processed_transcript
  ENST00000498382 CNIH3-002 224529191-224739621 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272133ENST00000470602ENST00000470788ENST00000471578ENST00000478120ENST00000479227ENST00000483512ENST00000492470ENST00000496372ENST00000498126ENST00000498382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272133 0.293±0.00 0.482±0.00 N/A 4.169±2.02 0.314±0.19 0.333±0.00 0.037±0.00 0.355±0.12 0.127±0.00 N/A 0.048±0.00 0.851±0.67 0.071±0.02 2.101±1.35
ENST00000470602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.388±0.00 N/A N/A N/A
ENST00000470788 N/A 0.739±0.00 0.217±0.00 N/A 0.382±0.00 N/A 0.179±0.00 N/A 0.082±0.00 0.197±0.00 N/A N/A N/A N/A
ENST00000471578 N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A 0.148±0.00 N/A N/A N/A 0.155±0.02 N/A
ENST00000478120 N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A N/A N/A 0.165±0.00 N/A
ENST00000479227 N/A N/A N/A N/A 0.149±0.00 N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000483512 0.535±0.00 N/A N/A N/A N/A N/A N/A 0.606±0.00 0.395±0.00 0.271±0.00 N/A 0.899±0.55 0.438±0.09 N/A
ENST00000492470 N/A N/A 0.592±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496372 N/A N/A N/A N/A N/A N/A N/A 0.495±0.00 0.188±0.00 N/A N/A 1.389±0.00 N/A 1.687±0.00
ENST00000498126 0.425±0.00 N/A N/A N/A 0.824±0.00 0.384±0.00 N/A 1.122±0.00 0.258±0.00 0.654±0.00 0.826±0.00 1.041±0.55 0.453±0.18 N/A
ENST00000498382 N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IP CIL_0008IP_0001 VISTA 1:224201914-224806293
CIL_0000C0 CIL_0000C0_0002 CGP 1:224356850-224437033
CIL_0005S2 CIL_0005S2_0001 CGP 1:224385143-224740549

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016020 IEA membrane
GO:0016247 IEA channel regulator activity
GO:0030054 IEA cell junction
GO:0032281 ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0035249 IEA synaptic transmission, glutamatergic
GO:0035556 IEA intracellular signal transduction
GO:0042391 IEA regulation of membrane potential
GO:0043198 ISS dendritic shaft
GO:0045211 ISS postsynaptic membrane
GO:2000311 IDA regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014953 cnih3 cornichon homolog 3 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000026514 Cnih3 cornichon homolog 3 (Drosophila) protein_coding Mus_musculus

Loading