C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005S2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000162923-ENSG00000143786 CGP 9606 1:224385143-224740549
GeneTranscriptPositionBiotype
ENSG00000143786 (CNIH3)
cornichon family AMPA receptor auxiliary protein 3 		ENST00000272133 (CNIH3-001) 224616293-224740549 protein_coding
ENST00000470602 (CNIH3-009) 224515862-224536981 processed_transcript
ENST00000470788 (CNIH3-014) 224529222-224537582 processed_transcript
ENST00000471578 (CNIH3-007) 224434660-224588616 processed_transcript
ENST00000478120 (CNIH3-003) 224529196-224739337 processed_transcript
ENST00000479227 (CNIH3-013) 224587140-224588604 processed_transcript
ENST00000481095 (CNIH3-004) 224529218-224734706 processed_transcript
ENST00000483512 (CNIH3-011) 224434912-224521555 processed_transcript
ENST00000489556 (CNIH3-005) 224529223-224588492 processed_transcript
ENST00000492470 (CNIH3-010) 224565365-224588555 processed_transcript
ENST00000496277 (CNIH3-006) 224529310-224681026 processed_transcript
ENST00000496372 (CNIH3-012) 224513688-224521221 processed_transcript
ENST00000498126 (CNIH3-008) 224434925-224521222 processed_transcript
ENST00000498382 (CNIH3-002) 224529191-224739621 processed_transcript
ENSG00000162923 (WDR26)
WD repeat domain 26 		ENST00000414423 (WDR26-001) 224385143-224434299 protein_coding
ENST00000443112 (WDR26-010) 224412909-224434013 retained_intron
ENST00000445239 (WDR26-003) 224419562-224437033 protein_coding
ENST00000477425 (WDR26-005) 224419549-224433838 processed_transcript
ENST00000479727 (WDR26-008) 224397727-224401019 processed_transcript
ENST00000479778 (WDR26-009) 224429297-224433850 retained_intron
ENST00000480676 (WDR26-007) 224385666-224411484 protein_coding
ENST00000486652 (WDR26-002) 224389136-224434081 nonsense_mediated_decay
ENST00000489825 (WDR26-006) 224419445-224433856 retained_intron
ENSG00000229400 (RP11-3L21.2)
 ENST00000431691 (RP11-3L21.2-001) 224717504-224730662 antisense
ENSG00000229991 (AKR1B1P1)
aldehyde reductase family 1, member B1 pseudogene 1 		ENST00000429105 (AKR1B1P1-001) 224574434-224575389 processed_pseudogene
ENSG00000233384 (RP11-100E13.1)
 ENST00000437416 (RP11-100E13.1-001) 224615296-224616220 antisense
ENSG00000251933 (AL596330.1)
 ENST00000516124 (AL596330.1-201) 224722467-224722541 miRNA
ENSG00000266618 (MIR4742)
microRNA 4742 		ENST00000581069 (MIR4742-201) 224398227-224398311 miRNA
CIL_0005S2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038733-ENSMUSG00000026514 CGP 10090 1:181173228-181460641
GeneTranscriptPositionBiotype
ENSMUSG00000026514 (Cnih3)
cornichon homolog 3 (Drosophila) 		ENSMUST00000027795 (Cnih3-002) 181352630-181460641 protein_coding
ENSMUST00000161880 (Cnih3-001) 181352628-181459909 protein_coding
ENSMUST00000162685 (Cnih3-003) 181353198-181459287 protein_coding
ENSMUSG00000038733 (Wdr26)
WD repeat domain 26 		ENSMUST00000036329 (Wdr26-003) 181177097-181211426 nonsense_mediated_decay
ENSMUST00000159290 (Wdr26-008) 181180407-181183739 protein_coding
ENSMUST00000159625 (Wdr26-005) 181187421-181192245 retained_intron
ENSMUST00000159673 (Wdr26-007) 181177675-181184266 nonsense_mediated_decay
ENSMUST00000159698 (Wdr26-006) 181182307-181184396 processed_transcript
ENSMUST00000161531 (Wdr26-004) 181198742-181203251 retained_intron
ENSMUST00000162819 (Wdr26-001) 181173228-181211552 protein_coding
ENSMUST00000162963 (Wdr26-002) 181173232-181211437 protein_coding
ENSMUSG00000054135 (A430110L20Rik)
RIKEN cDNA A430110L20 gene 		ENSMUST00000066988 (A430110L20Rik-201) 181226076-181228490 lincRNA
ENSMUST00000181680 (A430110L20Rik-001) 181225986-181228498 lincRNA
ENSMUSG00000081214 (Rpl35a-ps2)
ribosomal protein L35A, pseudogene 2 		ENSMUST00000117444 (Rpl35a-ps2-001) 181241988-181242320 processed_pseudogene
ENSMUSG00000089888 (Gm16547)
predicted gene 16547 		ENSMUST00000159474 (Gm16547-001) 181400464-181400756 processed_pseudogene
ENSMUSG00000089927 (Gm16539)
predicted gene 16539 		ENSMUST00000160086 (Gm16539-001) 181431723-181432400 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005S2_0001ENSG00000143786ENST00000272133ENST00000470602ENST00000470788ENST00000471578ENST00000478120ENST00000479227ENST00000481095ENST00000483512ENST00000489556ENST00000492470ENST00000496277ENST00000496372ENST00000498126ENST00000498382ENSG00000162923ENST00000414423ENST00000443112ENST00000445239ENST00000477425ENST00000479727ENST00000479778ENST00000480676ENST00000486652ENST00000489825ENSG00000229400ENST00000431691ENSG00000229991ENST00000429105ENSG00000233384ENST00000437416ENSG00000251933ENST00000516124ENSG00000266618ENST00000581069CIL_0005S2_0002ENSMUSG00000026514ENSMUST00000027795ENSMUST00000161880ENSMUST00000162685ENSMUSG00000038733ENSMUST00000036329ENSMUST00000159290ENSMUST00000159625ENSMUST00000159673ENSMUST00000159698ENSMUST00000161531ENSMUST00000162819ENSMUST00000162963ENSMUSG00000054135ENSMUST00000066988ENSMUST00000181680ENSMUSG00000081214ENSMUST00000117444ENSMUSG00000089888ENSMUST00000159474ENSMUSG00000089927ENSMUST00000160086
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005S2_0001ENSG00000143786ENST00000272133ENST00000470602ENST00000470788ENST00000471578ENST00000478120ENST00000479227ENST00000483512ENST00000492470ENST00000496372ENST00000498126ENST00000498382ENSG00000162923ENST00000414423ENST00000443112ENST00000480676ENST00000486652ENSG00000229400ENST00000431691ENSG00000229991ENST00000429105ENSG00000233384ENST00000437416ENSG00000251933ENST00000516124ENSG00000266618ENST00000581069CIL_0005S2_0002ENSMUSG00000026514ENSMUST00000027795ENSMUST00000161880ENSMUST00000162685ENSMUSG00000038733ENSMUST00000036329ENSMUST00000162819ENSMUST00000162963ENSMUSG00000054135ENSMUST00000066988ENSMUST00000181680ENSMUSG00000081214ENSMUST00000117444ENSMUSG00000089888ENSMUST00000159474ENSMUSG00000089927ENSMUST00000160086
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143786 ENST00000272133 0.293±0.00 0.482±0.00 N/A 4.169±2.02 0.314±0.19 0.333±0.00 0.037±0.00 0.355±0.12 0.127±0.00 N/A 0.048±0.00 0.851±0.67 0.071±0.02 2.101±1.35
ENST00000470602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.388±0.00 N/A N/A N/A
ENST00000470788 N/A 0.739±0.00 0.217±0.00 N/A 0.382±0.00 N/A 0.179±0.00 N/A 0.082±0.00 0.197±0.00 N/A N/A N/A N/A
ENST00000471578 N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A 0.148±0.00 N/A N/A N/A 0.155±0.02 N/A
ENST00000478120 N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A N/A N/A 0.165±0.00 N/A
ENST00000479227 N/A N/A N/A N/A 0.149±0.00 N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000481095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483512 0.535±0.00 N/A N/A N/A N/A N/A N/A 0.606±0.00 0.395±0.00 0.271±0.00 N/A 0.899±0.55 0.438±0.09 N/A
ENST00000489556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492470 N/A N/A 0.592±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496372 N/A N/A N/A N/A N/A N/A N/A 0.495±0.00 0.188±0.00 N/A N/A 1.389±0.00 N/A 1.687±0.00
ENST00000498126 0.425±0.00 N/A N/A N/A 0.824±0.00 0.384±0.00 N/A 1.122±0.00 0.258±0.00 0.654±0.00 0.826±0.00 1.041±0.55 0.453±0.18 N/A
ENST00000498382 N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000162923 ENST00000414423 12.771±0.00 10.265±0.00 3.744±0.00 7.392±3.29 13.675±0.00 5.951±2.20 5.328±2.28 7.025±0.00 3.471±0.83 10.533±0.00 9.560±0.00 5.638±2.74 1.575±0.45 6.141±0.00
ENST00000443112 N/A N/A 6.564±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.790±0.00 6.871±0.28 8.808±0.00 18.628±0.00
ENST00000486652 12.372±0.00 9.099±0.00 N/A N/A N/A 6.874±0.00 5.576±0.00 6.840±0.00 3.069±0.00 7.027±0.00 6.392±0.00 8.289±0.00 9.908±3.16 21.589±5.98
ENST00000489825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229400 ENST00000431691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A N/A
ENSG00000229991 ENST00000429105 N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A 0.015±0.00 0.161±0.00 N/A N/A
ENSG00000233384 ENST00000437416 0.058±0.00 N/A N/A 0.915±0.00 N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A 1.106±0.15
ENSG00000251933 ENST00000516124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.739±0.00
ENSG00000266618 ENST00000581069 1.229±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026514 ENSMUST00000027795 0.010±0.00 0.022±0.00 0.003±0.00 3.163±0.53 0.069±0.02 N/A 0.010±0.00 0.022±0.00 0.009±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161880 0.025±0.01 0.054±0.00 0.053±0.00 11.410±0.00 0.091±0.02 0.042±0.01 0.027±0.00 N/A 0.012±0.01 0.065±0.01 N/A 0.073±0.02 0.019±0.02 0.065±0.04
ENSMUST00000162685 0.049±0.00 N/A N/A 34.517±0.00 N/A N/A N/A N/A 0.089±0.07 0.040±0.00 N/A N/A 0.071±0.05 N/A
ENSMUSG00000038733 ENSMUST00000036329 7.600±1.65 23.803±7.54 N/A 8.867±2.84 7.917±0.41 9.113±0.87 4.981±1.11 N/A 5.720±0.40 10.046±2.76 N/A 19.018±8.78 18.859±7.26 18.064±7.37
ENSMUST00000159290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162819 5.573±0.54 N/A 6.617±0.04 4.585±1.67 5.455±1.19 N/A 4.313±1.13 3.004±0.23 11.548±6.34 5.163±1.25 6.823±1.08 4.534±0.89 4.928±1.57 3.014±0.92
ENSMUST00000162963 17.068±0.94 27.818±3.83 15.945±0.57 9.001±3.56 23.056±4.18 15.927±3.93 8.835±2.21 12.411±1.48 19.708±9.36 19.406±2.34 9.463±1.47 15.586±7.18 9.315±4.12 5.888±1.27
ENSMUSG00000054135 ENSMUST00000066988 0.238±0.10 0.406±0.09 N/A 0.152±0.00 0.938±0.24 0.233±0.06 0.345±0.07 0.260±0.05 0.304±0.21 0.864±0.11 0.230±0.09 0.857±0.33 0.325±0.07 0.181±0.03
ENSMUST00000181680 0.744±0.16 0.394±0.00 0.997±0.08 0.394±0.09 0.792±0.00 0.491±0.08 0.371±0.04 0.511±0.12 0.449±0.28 0.914±0.03 0.264±0.06 0.928±0.44 0.194±0.04 0.185±0.11
ENSMUSG00000081214 ENSMUST00000117444 N/A N/A 11.885±0.00 4.655±1.03 N/A N/A N/A N/A 20.093±0.95 N/A N/A N/A N/A N/A
ENSMUSG00000089888 ENSMUST00000159474 N/A N/A N/A 0.296±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089927 ENSMUST00000160086 N/A N/A N/A 0.257±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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