C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cornichon family AMPA receptor auxiliary protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272133 CNIH3-001 ENSG00000143786 9606 + 1:224616293-224740549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000272133
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000272133 0.293±0.00 0.482±0.00 4.169±2.02 0.314±0.19 0.333±0.00 0.037±0.00 0.355±0.12 0.127±0.00 0.048±0.00 0.851±0.67 0.071±0.02 2.101±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IP CIL_0008IP_0001 VISTA 1:224201914-224806293
CIL_0000C0 CIL_0000C0_0002 CGP 1:224356850-224437033
CIL_0005S2 CIL_0005S2_0001 CGP 1:224385143-224740549

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IEA membrane
GO:0016247 IEA channel regulator activity
GO:0030054 IEA cell junction
GO:0032281 ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0035249 IEA synaptic transmission, glutamatergic
GO:0035556 IEA intracellular signal transduction
GO:0042391 IEA regulation of membrane potential
GO:0043198 ISS dendritic shaft
GO:0045211 ISS postsynaptic membrane
GO:2000311 IDA regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027795 Cnih3-002 protein_coding Mus_musculus 0 682
ENSMUST00000161880 Cnih3-001 protein_coding Mus_musculus 0 394
ENSMUST00000146629 Cnih1-002 nonsense_mediated_decay Mus_musculus 1e-30 139
ENSMUST00000015903 Cnih1-001 protein_coding Mus_musculus 1e-30 139

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