C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein L-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143889 HNRNPLL 9606 - 2:38561978-38603586 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272249 HNRNPLL-005 38563508-38591641 nonsense_mediated_decay
  ENST00000358367 HNRNPLL-201 38563186-38603036 protein_coding
  ENST00000378915 HNRNPLL-202 38563186-38602626 protein_coding
  ENST00000409328 HNRNPLL-010 38564032-38602857 protein_coding
  ENST00000409636 HNRNPLL-002 38561978-38603029 protein_coding
  ENST00000410076 HNRNPLL-004 38581075-38602929 protein_coding
  ENST00000425682 HNRNPLL-007 38583843-38600026 protein_coding
  ENST00000441689 HNRNPLL-008 38568079-38569836 protein_coding
  ENST00000449105 HNRNPLL-001 38561978-38602966 protein_coding
  ENST00000488099 HNRNPLL-006 38581815-38585747 retained_intron
  ENST00000498516 HNRNPLL-003 38591576-38603586 processed_transcript
  ENST00000608859 HNRNPLL-203 38563186-38603036 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272249ENST00000358367ENST00000409328ENST00000409636ENST00000410076ENST00000425682ENST00000441689ENST00000449105
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272249 1.398±0.00 1.342±0.00 0.788±0.00 N/A 1.171±0.24 1.926±0.00 0.936±0.20 2.159±0.00 0.358±0.00 2.160±0.00 1.317±0.00 2.895±1.10 N/A 6.351±0.00
ENST00000358367 N/A N/A N/A N/A N/A 1.740±0.00 N/A N/A N/A N/A N/A 1.192±0.00 N/A 3.436±0.00
ENST00000409328 7.494±0.00 5.115±0.00 N/A 6.053±0.00 6.786±0.00 6.703±0.00 2.948±2.23 5.591±0.00 3.014±0.00 13.560±0.00 2.745±1.00 8.188±2.50 5.816±2.89 20.056±0.40
ENST00000409636 0.746±0.00 1.129±0.00 N/A 0.818±0.00 0.993±0.00 0.683±0.00 0.664±0.00 0.771±0.00 0.320±0.00 N/A 0.633±0.00 2.413±0.62 N/A 2.908±0.00
ENST00000410076 N/A N/A 0.671±0.00 2.416±0.00 1.763±0.00 2.146±0.00 N/A N/A N/A N/A N/A 3.763±0.00 N/A N/A
ENST00000425682 N/A N/A N/A N/A N/A N/A N/A 1.158±0.00 N/A N/A N/A N/A N/A N/A
ENST00000441689 N/A N/A N/A N/A N/A N/A N/A 1.145±0.00 N/A N/A N/A N/A N/A N/A
ENST00000449105 0.734±0.00 N/A 0.722±0.00 2.209±0.02 1.258±0.65 1.076±0.13 N/A 1.654±0.00 2.815±0.00 0.961±0.29 0.353±0.00 2.999±0.00 1.318±0.39 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IR CIL_0002IR_0001 CGP 2:38294880-38603586
CIL_00009N CIL_00009N_0001 CGP 2:38561978-38741237

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0016020 IDA membrane
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0033120 IDA positive regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000024095 Hnrnpll heterogeneous nuclear ribonucleoprotein L-like protein_coding Mus_musculus

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