C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein L-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409636 HNRNPLL-002 ENSG00000143889 9606 - 2:38561978-38603029 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000409636
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000409636 0.746±0.00 1.129±0.00 0.818±0.00 0.993±0.00 0.683±0.00 0.664±0.00 0.771±0.00 0.320±0.00 0.633±0.00 2.413±0.62 2.908±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IR CIL_0002IR_0001 CGP 2:38294880-38603586
CIL_00009N CIL_00009N_0001 CGP 2:38561978-38741237

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0016020 IDA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0033120 IDA positive regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184635 Hnrnpll-001 protein_coding Mus_musculus 0 2841
ENSMUST00000061331 Hnrnpll-201 protein_coding Mus_musculus 0 2835
ENSMUST00000184297 Hnrnpll-005 nonsense_mediated_decay Mus_musculus 0 1733
ENSMUST00000184578 Hnrnpll-004 retained_intron Mus_musculus 0 1168
ENSMUST00000184889 Hnrnpll-003 retained_intron Mus_musculus 0 894
ENSMUST00000183516 Hnrnpll-006 retained_intron Mus_musculus 0 732
ENSMUST00000184726 Hnrnpll-002 retained_intron Mus_musculus 1e-37 163

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