C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein L-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272249 HNRNPLL-005 ENSG00000143889 9606 - 2:38563508-38591641 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000272249
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000272249 1.398±0.00 1.342±0.00 0.788±0.00 1.171±0.24 1.926±0.00 0.936±0.20 2.159±0.00 0.358±0.00 2.160±0.00 1.317±0.00 2.895±1.10 6.351±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IR CIL_0002IR_0001 CGP 2:38294880-38603586
CIL_00009N CIL_00009N_0001 CGP 2:38561978-38741237

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184297 Hnrnpll-005 nonsense_mediated_decay Mus_musculus 0 2763
ENSMUST00000061331 Hnrnpll-201 protein_coding Mus_musculus 0 1733
ENSMUST00000184635 Hnrnpll-001 protein_coding Mus_musculus 0 1733
ENSMUST00000184889 Hnrnpll-003 retained_intron Mus_musculus 0 885
ENSMUST00000184578 Hnrnpll-004 retained_intron Mus_musculus 0 732
ENSMUST00000183516 Hnrnpll-006 retained_intron Mus_musculus 0 732
ENSMUST00000184726 Hnrnpll-002 retained_intron Mus_musculus 1e-34 152

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