C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat containing planar cell polarity effector
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143951 WDPCP 9606 - 2:63121383-63827843 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272321 WDPCP-002 63121383-63588799 protein_coding
  ENST00000398544 WDPCP-007 63121831-63438007 protein_coding
  ENST00000409120 WDPCP-001 63121814-63443230 protein_coding
  ENST00000409199 WDPCP-008 63121402-63477934 protein_coding
  ENST00000409354 WDPCP-009 63121383-63433930 nonsense_mediated_decay
  ENST00000409562 WDPCP-005 63228388-63588518 protein_coding
  ENST00000409835 WDPCP-004 63359795-63588518 processed_transcript
  ENST00000417238 WDPCP-003 63368823-63588518 nonsense_mediated_decay
  ENST00000418148 WDPCP-012 63437457-63588266 nonsense_mediated_decay
  ENST00000431065 WDPCP-011 63484942-63588799 protein_coding
  ENST00000462652 WDPCP-014 63377849-63382074 retained_intron
  ENST00000467687 WDPCP-017 63487472-63827843 processed_transcript
  ENST00000473678 WDPCP-013 63437453-63441043 protein_coding
  ENST00000484073 WDPCP-010 63564175-63588500 processed_transcript
  ENST00000487280 WDPCP-015 63121734-63153114 retained_intron
  ENST00000490935 WDPCP-016 63484604-63827843 processed_transcript
  ENST00000493315 WDPCP-006 63403709-63484689 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLungTestisENST00000409562
Transcript ID Breast Colon Heart Lung Testis
ENST00000409562 6.200±0.00 2.998±0.00 3.710±0.00 8.005±0.00 3.213±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000976 CIL_000976_0001 VISTA 2:62666720-63267794
CIL_00084N CIL_00084N_0001 VISTA 2:62678793-63279521
CIL_00090Q CIL_00090Q_0001 VISTA 2:62740879-63342178
CIL_00095K CIL_00095K_0001 VISTA 2:62748560-63349968
CIL_0007MW CIL_0007MW_0001 UCNEbase 2:62787578-63424747
CIL_000100 CIL_000100_0002 CGP 2:63050057-63827843

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001822 IEA kidney development
GO:0002093 IEA auditory receptor cell morphogenesis
GO:0005515 IEA protein binding
GO:0005856 IEA cytoskeleton
GO:0005886 ISS plasma membrane
GO:0005930 ISS axoneme
GO:0005938 ISS cell cortex
GO:0007224 IEA smoothened signaling pathway
GO:0007399 IEA nervous system development
GO:0010762 IEA regulation of fibroblast migration
GO:0016324 ISS apical plasma membrane
GO:0016476 ISS regulation of embryonic cell shape
GO:0032185 ISS septin cytoskeleton organization
GO:0032880 ISS regulation of protein localization
GO:0042384 IEA cilium assembly
GO:0042733 IEA embryonic digit morphogenesis
GO:0043010 IEA camera-type eye development
GO:0044782 IEA cilium organization
GO:0045184 IEA establishment of protein localization
GO:0048568 IEA embryonic organ development
GO:0051893 IEA regulation of focal adhesion assembly
GO:0055123 IEA digestive system development
GO:0060021 IEA palate development
GO:0060271 ISS cilium morphogenesis
GO:0060541 IEA respiratory system development
GO:0072358 IEA cardiovascular system development
GO:0090521 IEA glomerular visceral epithelial cell migration
GO:0097541 IEA axonemal basal plate
GO:1900027 IEA regulation of ruffle assembly
GO:2000114 IEA regulation of establishment of cell polarity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074590 wdpcp WD repeat containing planar cell polarity effector protein_coding Danio_rerio
ENSMUSG00000020319 Wdpcp WD repeat containing planar cell polarity effector protein_coding Mus_musculus

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