C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat containing planar cell polarity effector
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409562 WDPCP-005 ENSG00000143951 9606 - 2:63228388-63588518 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLungTestisENST00000409562
Transcript ID Breast Colon Heart Lung Testis
ENST00000409562 6.200±0.00 2.998±0.00 3.710±0.00 8.005±0.00 3.213±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000976 CIL_000976_0001 VISTA 2:62666720-63267794
CIL_00084N CIL_00084N_0001 VISTA 2:62678793-63279521
CIL_00090Q CIL_00090Q_0001 VISTA 2:62740879-63342178
CIL_00095K CIL_00095K_0001 VISTA 2:62748560-63349968
CIL_0007MW CIL_0007MW_0001 UCNEbase 2:62787578-63424747
CIL_000100 CIL_000100_0002 CGP 2:63050057-63827843

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005856 IEA cytoskeleton
GO:0005886 ISS plasma membrane
GO:0005930 ISS axoneme
GO:0005938 ISS cell cortex
GO:0016324 ISS apical plasma membrane
GO:0016476 ISS regulation of embryonic cell shape
GO:0032185 ISS septin cytoskeleton organization
GO:0032880 ISS regulation of protein localization
GO:0060271 ISS cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020568 Wdpcp-002 protein_coding Mus_musculus 0 1858
ENSMUST00000149757 Wdpcp-004 processed_transcript Mus_musculus 0 544
ENSMUST00000156624 Wdpcp-001 processed_transcript Mus_musculus 0 420
ENSMUST00000143608 Wdpcp-006 processed_transcript Mus_musculus 2e-39 169

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