C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000100_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000094992-ENSDARG00000074590 CGP 7955 17:24146910-24267829
GeneTranscriptPositionBiotype
ENSDARG00000043643 (ehbp1)
EH domain binding protein 1 		ENSDART00000064067 (ehbp1-201) 23939549-24152448 protein_coding
ENSDART00000155191 (ehbp1-002) 24104942-24132574 retained_intron
ENSDART00000156251 (ehbp1-001) 23937169-24143472 protein_coding
ENSDARG00000074590 (wdpcp)
WD repeat containing planar cell polarity effector 		ENSDART00000112665 (wdpcp-201) 24159122-24236178 protein_coding
ENSDART00000155020 (wdpcp-001) 24159205-24267829 protein_coding
ENSDART00000155192 (wdpcp-002) 24177722-24192684 protein_coding
ENSDARG00000094992 (otx1b)
orthodenticle homolog 1b 		ENSDART00000064083 (otx1b-001) 24146910-24152572 protein_coding
CIL_000100_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115507-ENSG00000143951 CGP 9606 2:63050057-63827843
GeneTranscriptPositionBiotype
ENSG00000014641 (MDH1)
malate dehydrogenase 1, NAD (soluble) 		ENST00000233114 (MDH1-001) 63588609-63607197 protein_coding
ENST00000409476 (MDH1-011) 63588973-63607091 protein_coding
ENST00000409908 (MDH1-010) 63588958-63607091 protein_coding
ENST00000421012 (MDH1-009) 63589325-63604810 nonsense_mediated_decay
ENST00000432309 (MDH1-003) 63589151-63604810 protein_coding
ENST00000436321 (MDH1-004) 63588982-63599288 protein_coding
ENST00000442225 (MDH1-006) 63588963-63595519 protein_coding
ENST00000454035 (MDH1-007) 63588997-63597538 protein_coding
ENST00000462944 (MDH1-005) 63588985-63590974 processed_transcript
ENST00000472098 (MDH1-002) 63588998-63598186 retained_intron
ENST00000484538 (MDH1-013) 63597548-63600052 retained_intron
ENST00000485155 (MDH1-008) 63588979-63594990 retained_intron
ENST00000485781 (MDH1-012) 63588609-63597657 retained_intron
ENST00000495083 (MDH1-014) 63605810-63607194 retained_intron
ENST00000539945 (MDH1-201) 63589151-63607194 protein_coding
ENST00000544381 (MDH1-202) 63589151-63607194 protein_coding
ENSG00000115507 (OTX1)
orthodenticle homeobox 1 		ENST00000282549 (OTX1-001) 63050802-63057836 protein_coding
ENST00000366671 (OTX1-002) 63050057-63057836 protein_coding
ENST00000405984 (OTX1-005) 63050831-63056583 nonsense_mediated_decay
ENST00000476383 (OTX1-006) 63050851-63052207 retained_intron
ENST00000477348 (OTX1-004) 63050830-63051804 retained_intron
ENST00000484066 (OTX1-003) 63050741-63053546 retained_intron
ENSG00000228305 (AC016734.2)
 ENST00000436998 (AC016734.2-001) 63622178-63622831 processed_pseudogene
ENSG00000228872 (AC096664.2)
 ENST00000393996 (AC096664.2-001) 63717122-63717899 processed_pseudogene
ENSG00000229221 (HNRNPA1P66)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 66 		ENST00000416539 (HNRNPA1P66-001) 63751697-63752630 processed_pseudogene
ENSG00000229920 (RPS4XP5)
ribosomal protein S4X pseudogene 5 		ENST00000419038 (RPS4XP5-001) 63643271-63644038 transcribed_processed_pseudogene
ENST00000449995 (RPS4XP5-002) 63642455-63643788 processed_transcript
ENSG00000232403 (RP11-511I11.1)
 ENST00000428700 (RP11-511I11.1-001) 63108118-63108429 processed_pseudogene
ENSG00000233716 (AC074367.1)
 ENST00000438685 (AC074367.1-001) 63232453-63233577 processed_pseudogene
ENSG00000234488 (AC096664.1)
 ENST00000411843 (AC096664.1-001) 63684305-63684710 processed_pseudogene
ENSG00000242412 (DBIL5P2)
diazepam binding inhibitor-like 5 pseudogene 2 		ENST00000443827 (DBIL5P2-001) 63119011-63119263 transcribed_processed_pseudogene
ENST00000491724 (DBIL5P2-002) 63117851-63119542 processed_transcript
ENSG00000276843 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000611643 (Metazoa_SRP.1-395) 63168600-63168847 misc_RNA
ENSG00000279485 (RP11-391A7.1)
 ENST00000624325 (RP11-391A7.1-001) 63517892-63519268 TEC

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000100_0001ENSDARG00000043643ENSDART00000064067ENSDART00000155191ENSDART00000156251ENSDARG00000074590ENSDART00000112665ENSDART00000155020ENSDART00000155192ENSDARG00000094992ENSDART00000064083CIL_000100_0002ENSG00000014641ENST00000233114ENST00000409476ENST00000409908ENST00000421012ENST00000432309ENST00000436321ENST00000442225ENST00000454035ENST00000462944ENST00000472098ENST00000484538ENST00000485155ENST00000485781ENST00000495083ENST00000539945ENST00000544381ENSG00000115507ENST00000282549ENST00000366671ENST00000405984ENST00000476383ENST00000477348ENST00000484066ENSG00000228305ENST00000436998ENSG00000228872ENST00000393996ENSG00000229221ENST00000416539ENSG00000229920ENST00000419038ENST00000449995ENSG00000232403ENST00000428700ENSG00000233716ENST00000438685ENSG00000234488ENST00000411843ENSG00000242412ENST00000443827ENST00000491724ENSG00000276843ENST00000611643ENSG00000279485ENST00000624325
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000100_0001ENSDARG00000043643ENSDART00000064067ENSDART00000156251ENSDARG00000074590ENSDART00000112665ENSDART00000155020ENSDARG00000094992ENSDART00000064083CIL_000100_0002ENSG00000014641ENST00000233114ENST00000409476ENST00000409908ENST00000432309ENST00000539945ENSG00000115507ENST00000282549ENST00000366671ENST00000405984ENST00000484066ENSG00000228305ENST00000436998ENSG00000228872ENST00000393996ENSG00000229221ENST00000416539ENSG00000229920ENST00000419038ENST00000449995ENSG00000232403ENST00000428700ENSG00000233716ENST00000438685ENSG00000234488ENST00000411843ENSG00000242412ENST00000443827ENST00000491724ENSG00000276843ENST00000611643ENSG00000279485ENST00000624325
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000043643 ENSDART00000064067 N/A N/A N/A 1.865±0.14 N/A N/A N/A 0.257±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000155191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156251 N/A N/A N/A 7.974±2.28 N/A N/A 34.905±19.31 7.497±3.48 0.269±0.00 N/A 0.975±0.00 N/A N/A N/A
ENSDARG00000074590 ENSDART00000112665 N/A N/A N/A 0.851±0.21 N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A
ENSDART00000155020 N/A N/A N/A 0.533±0.43 N/A N/A 2.497±0.00 1.142±0.00 N/A N/A 0.400±0.00 N/A N/A N/A
ENSDART00000155192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000094992 ENSDART00000064083 N/A N/A N/A 8.928±2.62 N/A N/A N/A 11.423±5.27 0.536±0.00 N/A 0.620±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000014641 ENST00000233114 10.346±0.00 9.686±0.00 N/A 87.301±17.22 28.665±15.94 14.882±2.91 109.342±45.50 21.335±7.95 16.675±0.85 7.531±1.98 31.080±19.28 18.768±10.00 10.689±1.52 17.156±9.17
ENST00000409476 12.858±0.00 26.373±0.00 N/A 77.351±0.00 43.637±0.00 27.373±0.00 195.350±0.00 63.129±0.00 30.532±0.00 19.426±0.00 17.773±0.00 50.879±0.00 33.883±0.00 28.328±3.77
ENST00000409908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.707±0.00 20.813±7.06 12.390±0.00
ENST00000421012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432309 N/A N/A N/A 44.975±0.00 N/A N/A 30.555±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000436321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539945 5.995±0.00 18.064±0.00 11.327±0.00 42.763±0.00 34.693±0.00 10.036±0.00 130.164±0.00 47.381±0.00 16.591±0.00 14.486±0.00 7.322±0.00 33.706±0.00 29.219±0.21 N/A
ENST00000544381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000115507 ENST00000282549 N/A N/A N/A 0.310±0.15 0.151±0.00 N/A N/A N/A N/A N/A N/A 0.144±0.00 0.008±0.00 N/A
ENST00000366671 N/A N/A N/A 0.190±0.00 N/A N/A N/A 0.065±0.00 0.021±0.00 0.382±0.00 N/A 0.425±0.43 0.045±0.01 0.171±0.00
ENST00000405984 0.059±0.00 N/A N/A 0.103±0.00 0.169±0.00 N/A N/A N/A N/A N/A N/A 0.273±0.00 0.018±0.00 N/A
ENST00000476383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484066 N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00
ENSG00000228305 ENST00000436998 0.087±0.00 0.124±0.00 0.095±0.00 N/A 0.090±0.01 N/A N/A 0.902±0.87 0.167±0.00 0.092±0.00 N/A 0.116±0.00 0.241±0.00 0.273±0.19
ENSG00000228872 ENST00000393996 N/A N/A N/A N/A 0.056±0.00 N/A 0.500±0.00 N/A N/A N/A 0.811±0.00 0.065±0.00 0.058±0.00 0.051±0.00
ENSG00000229221 ENST00000416539 0.066±0.00 0.028±0.00 N/A 0.042±0.00 0.473±0.07 N/A 0.136±0.01 0.508±0.39 0.025±0.00 N/A 0.244±0.04 0.015±0.00 0.040±0.00 0.150±0.13
ENSG00000229920 ENST00000419038 N/A N/A 0.171±0.00 N/A 0.290±0.00 0.014±0.00 0.032±0.00 0.410±0.00 0.079±0.00 N/A 0.013±0.00 N/A N/A 0.162±0.00
ENST00000449995 0.036±0.00 0.088±0.00 0.191±0.00 0.042±0.00 0.525±0.11 0.081±0.00 0.025±0.00 0.588±0.51 N/A 0.050±0.00 0.191±0.00 0.016±0.00 0.053±0.00 0.137±0.12
ENSG00000232403 ENST00000428700 N/A 0.099±0.00 N/A 0.204±0.00 N/A N/A N/A N/A N/A N/A N/A 0.572±0.00 N/A 0.088±0.00
ENSG00000233716 ENST00000438685 0.009±0.00 0.017±0.00 0.297±0.00 0.174±0.14 0.190±0.18 0.216±0.00 0.153±0.13 0.424±0.37 0.260±0.00 0.650±0.00 N/A 0.212±0.32 0.045±0.00 0.113±0.06
ENSG00000234488 ENST00000411843 0.038±0.00 0.080±0.00 N/A N/A 0.040±0.00 0.037±0.00 0.096±0.00 N/A 0.143±0.00 N/A 0.388±0.00 0.106±0.00 N/A 0.179±0.00
ENSG00000242412 ENST00000443827 N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A 0.161±0.00
ENST00000491724 0.014±0.00 0.102±0.00 0.056±0.00 0.053±0.02 0.065±0.00 0.007±0.00 0.052±0.03 N/A N/A 0.070±0.01 N/A 0.121±0.13 0.031±0.00 0.053±0.03
ENSG00000276843 ENST00000611643 N/A N/A N/A N/A N/A 0.293±0.00 N/A N/A 0.069±0.00 0.073±0.00 0.275±0.00 N/A N/A N/A
ENSG00000279485 ENST00000624325 0.130±0.00 0.336±0.00 N/A 0.203±0.00 0.213±0.00 0.090±0.05 0.073±0.01 0.138±0.00 0.111±0.00 0.180±0.00 N/A 0.039±0.00 0.035±0.00 0.133±0.06

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