C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 200kDa (U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323853 SNRNP200-001 ENSG00000144028 9606 - 2:96274336-96305515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323853
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323853 19.525±0.00 14.342±0.00 4.366±0.00 10.757±4.50 8.678±3.28 9.376±1.57 2.504±0.16 8.632±3.91 7.000±1.72 10.661±0.71 14.472±9.22 14.273±6.87 16.862±2.85 21.642±1.80

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000354 IC cis assembly of pre-catalytic spliceosome
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004004 IDA ATP-dependent RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005682 IDA U5 snRNP
GO:0006200 IDA ATP catabolic process
GO:0008026 IDA ATP-dependent helicase activity
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016787 IEA hydrolase activity
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103220 Snrnp200-001 protein_coding Mus_musculus 0 8626
ENSDART00000109885 snrnp200-001 protein_coding Danio_rerio 0 4337
ENSMUST00000142327 Snrnp200-002 retained_intron Mus_musculus 0 2706
ENSMUST00000140868 Snrnp200-003 processed_transcript Mus_musculus 0 717
ENSMUST00000131435 Snrnp200-005 retained_intron Mus_musculus 0 466
ENSMUST00000143481 Snrnp200-004 retained_intron Mus_musculus 0 460
ENSDART00000143385 snrnp200-002 processed_transcript Danio_rerio 0 353

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