C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB, member of RAS oncogene family-like 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144134 RABL2A 9606 + 2:113627229-113643396 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376439 RABL2A-201 113627387-113643231 protein_coding
  ENST00000393165 RABL2A-003 113627244-113643391 protein_coding
  ENST00000393166 RABL2A-001 113627307-113643391 protein_coding
  ENST00000393167 RABL2A-002 113627229-113643396 protein_coding
  ENST00000409121 RABL2A-014 113628328-113643392 retained_intron
  ENST00000409842 RABL2A-008 113627240-113643392 protein_coding
  ENST00000409875 RABL2A-013 113627311-113643392 protein_coding
  ENST00000413545 RABL2A-004 113627244-113640938 protein_coding
  ENST00000450954 RABL2A-009 113627264-113643368 nonsense_mediated_decay
  ENST00000452831 RABL2A-011 113627283-113643328 nonsense_mediated_decay
  ENST00000465711 RABL2A-021 113627287-113637747 processed_transcript
  ENST00000467600 RABL2A-020 113627276-113635513 retained_intron
  ENST00000476236 RABL2A-015 113628586-113633895 retained_intron
  ENST00000477218 RABL2A-005 113635051-113641388 processed_transcript
  ENST00000478880 RABL2A-016 113637367-113643392 processed_transcript
  ENST00000486403 RABL2A-018 113640408-113643389 retained_intron
  ENST00000493876 RABL2A-022 113628570-113634620 retained_intron
  ENST00000494909 RABL2A-017 113640020-113643389 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393167ENST00000409121ENST00000409842ENST00000413545ENST00000452831ENST00000465711ENST00000467600ENST00000476236ENST00000477218ENST00000478880ENST00000486403ENST00000493876ENST00000494909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393167 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.468±0.00 N/A
ENST00000409121 N/A 0.748±0.00 N/A 0.721±0.00 0.485±0.03 0.275±0.12 0.134±0.00 0.671±0.31 N/A 1.104±0.04 N/A 1.069±0.43 0.185±0.00 1.652±0.10
ENST00000409842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.502±0.00 N/A
ENST00000413545 N/A N/A N/A 1.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452831 N/A N/A N/A N/A N/A 0.275±0.00 N/A N/A 0.082±0.00 N/A N/A 1.299±0.00 N/A N/A
ENST00000465711 N/A 1.161±0.00 0.629±0.00 1.526±0.00 0.881±0.44 0.986±0.00 0.476±0.00 N/A N/A 1.795±0.00 N/A 2.318±0.21 0.682±0.00 7.438±0.00
ENST00000467600 0.623±0.00 1.324±0.00 N/A N/A N/A 0.511±0.00 N/A N/A 1.276±0.00 N/A 0.358±0.00 N/A 0.521±0.00 N/A
ENST00000476236 0.262±0.00 0.680±0.00 0.605±0.00 N/A N/A N/A 0.212±0.00 0.623±0.32 N/A N/A N/A N/A N/A N/A
ENST00000477218 N/A N/A N/A N/A N/A N/A N/A 0.827±0.00 0.109±0.00 N/A N/A N/A N/A N/A
ENST00000478880 N/A N/A N/A 0.736±0.00 N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A
ENST00000486403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.018±0.00 0.178±0.00 N/A
ENST00000493876 N/A N/A N/A N/A N/A N/A N/A N/A 0.337±0.17 N/A N/A 0.543±0.00 N/A N/A
ENST00000494909 0.208±0.00 0.664±0.00 N/A 0.724±0.15 0.453±0.00 0.269±0.03 0.149±0.00 0.676±0.00 N/A 0.665±0.00 0.131±0.00 1.112±0.18 0.274±0.00 2.215±1.22

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 TAS:IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 TAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063321 rabl2 RAB, member of RAS oncogene family-like 2 protein_coding Danio_rerio
ENSMUSG00000022621 Rabl2 RAB, member RAS oncogene family-like 2 protein_coding Mus_musculus

Loading