C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB, member RAS oncogene family-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022621 Rabl2 10090 - 15:89582533-89591923 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023294 Rabl2-001 89582533-89591923 protein_coding
  ENSMUST00000094056 Rabl2-002 89582537-89591864 protein_coding
  ENSMUST00000163376 Rabl2-003 89586232-89591905 retained_intron
  ENSMUST00000165747 Rabl2-004 89582537-89591865 retained_intron
  ENSMUST00000169466 Rabl2-010 89583355-89591890 nonsense_mediated_decay
  ENSMUST00000170126 Rabl2-009 89583644-89591886 nonsense_mediated_decay
  ENSMUST00000171142 Rabl2-007 89587893-89591876 processed_transcript
  ENSMUST00000171580 Rabl2-008 89583383-89591839 nonsense_mediated_decay
  ENSMUST00000171826 Rabl2-005 89583398-89584317 protein_coding
  ENSMUST00000172053 Rabl2-006 89583041-89590399 nonsense_mediated_decay
  ENSMUST00000172074 Rabl2-011 89583313-89584542 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023294ENSMUST00000094056ENSMUST00000163376ENSMUST00000165747ENSMUST00000169466ENSMUST00000170126ENSMUST00000171580ENSMUST00000172053ENSMUST00000172074
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023294 3.961±0.82 1.123±0.32 6.969±1.28 18.561±12.34 2.528±1.24 1.767±0.53 0.987±0.21 3.140±0.53 2.446±1.37 4.280±0.70 0.630±0.24 11.883±4.41 3.574±1.41 43.740±1.41
ENSMUST00000094056 N/A N/A N/A N/A N/A N/A N/A 1.444±0.00 N/A N/A N/A 2.590±0.00 N/A N/A
ENSMUST00000163376 N/A N/A N/A N/A 0.769±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165747 1.267±0.62 N/A N/A 7.135±2.57 1.604±0.22 1.333±0.67 0.287±0.00 2.073±0.00 0.551±0.16 1.313±0.32 0.164±0.03 4.771±1.13 0.806±0.00 N/A
ENSMUST00000169466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.771±0.00 N/A 208.683±0.00
ENSMUST00000170126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.507±0.00 5.696±0.00 N/A N/A
ENSMUST00000171580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.747±0.00 N/A
ENSMUST00000172053 N/A N/A N/A 18.144±0.00 N/A N/A N/A N/A N/A N/A N/A 11.763±0.00 10.465±1.19 29.240±0.00
ENSMUST00000172074 N/A N/A N/A 7.124±0.00 N/A N/A N/A N/A N/A N/A 0.466±0.03 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066R CIL_00066R_0002 CGP 15:89568326-89591923

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IDA GTP binding
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007338 IMP single fertilization
GO:0030317 IMP sperm motility
GO:0030992 IDA intraciliary transport particle B
GO:0042384 IMP cilium assembly
GO:0097225 IDA sperm midpiece

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063321 rabl2 RAB, member of RAS oncogene family-like 2 protein_coding Danio_rerio
ENSG00000079974 RABL2B RAB, member of RAS oncogene family-like 2B protein_coding Homo_sapiens
ENSG00000144134 RABL2A RAB, member of RAS oncogene family-like 2A protein_coding Homo_sapiens

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