C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclic nucleotide gated channel alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144191 CNGA3 9606 + 2:98346155-98398601 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272602 CNGA3-001 98369937-98398601 protein_coding
  ENST00000393503 CNGA3-004 98379901-98389772 retained_intron
  ENST00000393504 CNGA3-201 98346155-98398594 protein_coding
  ENST00000409937 CNGA3-003 98377288-98397632 protein_coding
  ENST00000436404 CNGA3-002 98346188-98397344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000272602ENST00000409937ENST00000436404
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000272602 N/A 0.023±0.00 N/A N/A N/A N/A 0.008±0.00 0.060±0.04 0.027±0.01 0.016±0.00 0.366±0.00
ENST00000409937 N/A N/A 0.155±0.00 N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A
ENST00000436404 0.016±0.00 N/A 0.335±0.00 0.094±0.00 N/A 0.110±0.00 N/A 0.058±0.00 0.017±0.00 0.014±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002U5 CIL_0002U5_0001 CGP 2:98346155-98594390

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IEA photoreceptor outer segment
GO:0005216 IEA ion channel activity
GO:0005221 IEA intracellular cyclic nucleotide activated cation channel activity
GO:0005222 IBA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005887 IBA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0006812 IMP cation transport
GO:0007165 TAS signal transduction
GO:0007601 IEA visual perception
GO:0007603 IBA phototransduction, visible light
GO:0008022 IEA protein C-terminus binding
GO:0015276 TAS ligand-gated ion channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030425 IEA dendrite
GO:0030553 IBA cGMP binding
GO:0031960 IEA response to corticosteroid
GO:0032026 IEA response to magnesium ion
GO:0034220 IEA ion transmembrane transport
GO:0042391 IBA regulation of membrane potential
GO:0042622 IEA photoreceptor outer segment membrane
GO:0043025 IEA neuronal cell body
GO:0043204 IEA perikaryon
GO:0046549 IEA retinal cone cell development
GO:0051591 IEA response to cAMP
GO:0055085 IEA transmembrane transport
GO:0071805 IBA potassium ion transmembrane transport
GO:1902495 IDA transmembrane transporter complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012297 cnga3b cyclic nucleotide gated channel alpha 3b protein_coding Danio_rerio
ENSDARG00000070726 cnga3a cyclic nucleotide gated channel alpha 3a protein_coding Danio_rerio
ENSMUSG00000026114 Cnga3 cyclic nucleotide gated channel alpha 3 protein_coding Mus_musculus

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