C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypeptide N-acetylgalactosaminyltransferase 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144278 GALNT13 9606 + 2:153871913-154453849 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392825 GALNT13-001 153871913-154453849 protein_coding
  ENST00000409237 GALNT13-005 153944498-154451303 protein_coding
  ENST00000422126 GALNT13-006 154409011-154450793 protein_coding
  ENST00000431076 GALNT13-003 154140341-154409340 nonsense_mediated_decay
  ENST00000434213 GALNT13-002 153871953-153944555 protein_coding
  ENST00000450838 GALNT13-009 154301579-154450730 protein_coding
  ENST00000453715 GALNT13-004 154438592-154450745 protein_coding
  ENST00000487047 GALNT13-010 154257567-154438676 processed_transcript
  ENST00000489553 GALNT13-008 154441721-154450801 processed_transcript
  ENST00000494805 GALNT13-007 154446478-154450694 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000392825ENST00000409237ENST00000431076ENST00000450838ENST00000487047
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000392825 0.232±0.00 0.094±0.00 0.015±0.00 2.672±0.00 0.223±0.00 0.128±0.00 N/A N/A 0.180±0.00 N/A 0.069±0.01 0.121±0.06 0.276±0.00
ENST00000409237 N/A N/A N/A N/A 0.225±0.00 0.096±0.00 0.047±0.00 N/A N/A 0.690±0.00 N/A 0.148±0.00 N/A
ENST00000431076 N/A N/A 0.258±0.00 N/A N/A N/A N/A 0.156±0.00 N/A N/A 0.059±0.04 N/A 0.303±0.00
ENST00000450838 N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A
ENST00000487047 N/A N/A N/A N/A 0.981±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075A CIL_00075A_0001 CGP 2:153477338-154453849
CIL_00075B CIL_00075B_0001 CGP 2:153871913-154858352

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0006493 IEA protein O-linked glycosylation
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077128 galnt13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 protein_coding Danio_rerio
ENSMUSG00000060988 Galnt13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 protein_coding Mus_musculus

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