C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00075B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144278-ENSG00000162989 CGP 9606 2:153871913-154858352
GeneTranscriptPositionBiotype
ENSG00000144278 (GALNT13)
polypeptide N-acetylgalactosaminyltransferase 13 		ENST00000392825 (GALNT13-001) 153871913-154453849 protein_coding
ENST00000409237 (GALNT13-005) 153944498-154451303 protein_coding
ENST00000422126 (GALNT13-006) 154409011-154450793 protein_coding
ENST00000431076 (GALNT13-003) 154140341-154409340 nonsense_mediated_decay
ENST00000434213 (GALNT13-002) 153871953-153944555 protein_coding
ENST00000450838 (GALNT13-009) 154301579-154450730 protein_coding
ENST00000453715 (GALNT13-004) 154438592-154450745 protein_coding
ENST00000487047 (GALNT13-010) 154257567-154438676 processed_transcript
ENST00000489553 (GALNT13-008) 154441721-154450801 processed_transcript
ENST00000494805 (GALNT13-007) 154446478-154450694 retained_intron
ENSG00000162989 (KCNJ3)
potassium inwardly-rectifying channel, subfamily J, member 3 		ENST00000295101 (KCNJ3-001) 154698299-154858351 protein_coding
ENST00000493505 (KCNJ3-002) 154709332-154855028 processed_transcript
ENST00000544049 (KCNJ3-201) 154698581-154858352 protein_coding
ENSG00000212001 (AC009297.1)
 ENST00000390712 (AC009297.1-201) 154231718-154231829 miRNA
ENSG00000224675 (AC009227.2)
 ENST00000434635 (AC009227.2-001) 154435853-154457438 antisense
ENSG00000230251 (PHBP4)
prohibitin pseudogene 4 		ENST00000437447 (PHBP4-001) 154286589-154287425 processed_pseudogene
ENSG00000235949 (AC061961.2)
 ENST00000443901 (AC061961.2-001) 154696462-154697817 antisense
ENSG00000238004 (AC009227.3)
 ENST00000432599 (AC009227.3-001) 154459857-154460820 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00075B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060988-ENSMUSG00000026824 CGP 10090 2:54436317-55598145
GeneTranscriptPositionBiotype
ENSMUSG00000026824 (Kcnj3)
potassium inwardly-rectifying channel, subfamily J, member 3 		ENSMUST00000067101 (Kcnj3-001) 55435970-55598145 protein_coding
ENSMUST00000112632 (Kcnj3-002) 55437165-55598140 protein_coding
ENSMUST00000112633 (Kcnj3-201) 55437156-55595525 protein_coding
ENSMUSG00000060988 (Galnt13)
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 		ENSMUST00000068595 (Galnt13-201) 54516540-55112961 protein_coding
ENSMUST00000112634 (Galnt13-003) 54436387-55118309 protein_coding
ENSMUST00000112635 (Galnt13-002) 54436387-55118309 protein_coding
ENSMUST00000112636 (Galnt13-001) 54436317-55118309 protein_coding
ENSMUST00000136642 (Galnt13-004) 54436491-54733133 protein_coding
ENSMUSG00000082301 (Gm14032)
predicted gene 14032 		ENSMUST00000117686 (Gm14032-001) 55292065-55293090 processed_pseudogene
ENSMUSG00000087040 (Gm14033)
predicted gene 14033 		ENSMUST00000128307 (Gm14033-001) 55411815-55433435 lincRNA
ENSMUST00000155997 (Gm14033-002) 55411790-55421350 lincRNA
ENSMUSG00000097837 (Gm26794)
predicted gene, 26794 		ENSMUST00000180810 (Gm26794-201) 55433514-55437860 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00075B_0001ENSG00000144278ENST00000392825ENST00000409237ENST00000422126ENST00000431076ENST00000434213ENST00000450838ENST00000453715ENST00000487047ENST00000489553ENST00000494805ENSG00000162989ENST00000295101ENST00000493505ENST00000544049ENSG00000212001ENST00000390712ENSG00000224675ENST00000434635ENSG00000230251ENST00000437447ENSG00000235949ENST00000443901ENSG00000238004ENST00000432599CIL_00075B_0002ENSMUSG00000026824ENSMUST00000067101ENSMUST00000112632ENSMUST00000112633ENSMUSG00000060988ENSMUST00000068595ENSMUST00000112634ENSMUST00000112635ENSMUST00000112636ENSMUST00000136642ENSMUSG00000082301ENSMUST00000117686ENSMUSG00000087040ENSMUST00000128307ENSMUST00000155997ENSMUSG00000097837ENSMUST00000180810
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00075B_0001ENSG00000144278ENST00000392825ENST00000409237ENST00000431076ENST00000450838ENST00000487047ENSG00000162989ENST00000295101ENST00000493505ENST00000544049ENSG00000212001ENST00000390712ENSG00000224675ENST00000434635ENSG00000230251ENST00000437447ENSG00000235949ENST00000443901ENSG00000238004ENST00000432599CIL_00075B_0002ENSMUSG00000026824ENSMUST00000067101ENSMUST00000112632ENSMUST00000112633ENSMUSG00000060988ENSMUST00000068595ENSMUST00000112635ENSMUST00000112636ENSMUST00000136642ENSMUSG00000082301ENSMUST00000117686ENSMUSG00000087040ENSMUST00000128307ENSMUST00000155997ENSMUSG00000097837ENSMUST00000180810
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144278 ENST00000392825 0.232±0.00 0.094±0.00 0.015±0.00 2.672±0.00 0.223±0.00 0.128±0.00 N/A N/A 0.180±0.00 N/A N/A 0.069±0.01 0.121±0.06 0.276±0.00
ENST00000409237 N/A N/A N/A N/A 0.225±0.00 0.096±0.00 0.047±0.00 N/A N/A 0.690±0.00 N/A N/A 0.148±0.00 N/A
ENST00000422126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431076 N/A N/A 0.258±0.00 N/A N/A N/A N/A 0.156±0.00 N/A N/A N/A 0.059±0.04 N/A 0.303±0.00
ENST00000434213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450838 N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000453715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487047 N/A N/A N/A N/A 0.981±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000162989 ENST00000295101 0.046±0.00 0.082±0.00 1.530±0.00 7.083±0.30 N/A 0.109±0.02 0.934±0.00 1.636±1.01 0.102±0.00 N/A N/A 0.132±0.08 N/A 0.580±0.00
ENST00000493505 N/A N/A N/A N/A N/A N/A N/A N/A 1.541±0.00 N/A N/A N/A 0.054±0.00 N/A
ENST00000544049 N/A 0.170±0.00 N/A N/A 0.089±0.00 N/A N/A 0.647±0.00 0.128±0.02 0.086±0.00 0.115±0.00 0.101±0.00 0.016±0.01 0.146±0.00
ENSG00000212001 ENST00000390712 N/A 0.817±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224675 ENST00000434635 0.110±0.00 0.189±0.00 0.085±0.00 N/A 0.058±0.00 0.096±0.00 0.040±0.00 0.105±0.00 0.060±0.00 0.096±0.00 0.022±0.00 0.024±0.00 N/A 0.051±0.04
ENSG00000230251 ENST00000437447 N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A 0.071±0.02
ENSG00000235949 ENST00000443901 N/A N/A 0.628±0.00 0.341±0.00 N/A 0.037±0.00 0.037±0.00 0.200±0.00 0.035±0.00 N/A N/A N/A N/A N/A
ENSG00000238004 ENST00000432599 N/A N/A N/A 0.212±0.16 N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026824 ENSMUST00000067101 0.176±0.05 0.038±0.00 N/A 1.450±0.84 0.013±0.00 0.032±0.00 7.391±0.23 0.016±0.01 N/A 0.375±0.19 0.079±0.01 0.703±0.22 0.004±0.00 N/A
ENSMUST00000112632 N/A N/A 0.004±0.00 1.448±0.72 N/A 0.094±0.00 N/A 0.037±0.00 0.016±0.01 N/A 0.056±0.02 1.163±0.44 N/A N/A
ENSMUST00000112633 0.099±0.00 0.147±0.03 0.008±0.00 1.610±0.17 0.049±0.01 0.173±0.08 23.210±0.88 0.122±0.04 0.013±0.01 1.315±0.19 0.066±0.00 2.535±0.63 N/A 0.039±0.02
ENSMUSG00000060988 ENSMUST00000068595 N/A N/A N/A 2.639±0.00 N/A N/A N/A N/A 0.009±0.00 N/A N/A 0.099±0.09 0.027±0.00 0.079±0.05
ENSMUST00000112634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112635 0.003±0.00 0.028±0.00 N/A 0.684±0.40 0.040±0.03 0.133±0.03 0.004±0.00 0.005±0.00 0.005±0.00 0.200±0.10 0.000±0.00 0.200±0.06 0.005±0.00 0.014±0.02
ENSMUST00000112636 0.002±0.00 0.061±0.03 0.003±0.00 0.399±0.16 0.009±0.00 0.209±0.09 0.005±0.00 0.001±0.00 0.003±0.00 0.426±0.20 0.003±0.00 0.113±0.07 0.010±0.01 0.004±0.00
ENSMUST00000136642 N/A N/A 0.037±0.00 N/A 0.050±0.00 0.103±0.00 N/A N/A N/A 0.593±0.15 N/A 0.207±0.13 N/A 0.033±0.02
ENSMUSG00000082301 ENSMUST00000117686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00
ENSMUSG00000087040 ENSMUST00000128307 N/A N/A N/A N/A N/A N/A 0.042±0.01 N/A N/A N/A N/A 0.032±0.02 N/A 0.051±0.05
ENSMUST00000155997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A 0.151±0.00
ENSMUSG00000097837 ENSMUST00000180810 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A 0.004±0.00 N/A 0.018±0.00 0.244±0.00 N/A N/A

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