C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4, sodium bicarbonate transporter, member 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144290 SLC4A10 9606 + 2:161424332-161985282 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272716 SLC4A10-009 161624426-161983245 protein_coding
  ENST00000375514 SLC4A10-201 161624335-161985275 protein_coding
  ENST00000415876 SLC4A10-001 161624338-161985282 protein_coding
  ENST00000421911 SLC4A10-010 161624461-161983359 protein_coding
  ENST00000446228 SLC4A10-005 161624461-161983359 nonsense_mediated_decay
  ENST00000446997 SLC4A10-004 161624426-161985253 protein_coding
  ENST00000461456 SLC4A10-003 161624418-161873921 processed_transcript
  ENST00000481721 SLC4A10-006 161624435-161839876 processed_transcript
  ENST00000482861 SLC4A10-007 161424332-161771035 processed_transcript
  ENST00000493021 SLC4A10-002 161624400-161901160 processed_transcript
  ENST00000605990 SLC4A10-008 161424373-161624566 processed_transcript
  ENST00000606386 SLC4A10-011 161427453-161651290 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000272716ENST00000375514ENST00000415876ENST00000421911ENST00000446228ENST00000446997ENST00000461456ENST00000606386
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000272716 0.012±0.00 N/A 0.029±0.00 14.834±0.00 0.346±0.00 N/A 0.033±0.00 0.135±0.00 0.040±0.00 0.013±0.01 0.011±0.00 0.319±0.00
ENST00000375514 N/A N/A N/A 7.319±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415876 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.033±0.00 0.002±0.00 0.009±0.01 N/A
ENST00000421911 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A
ENST00000446228 N/A N/A N/A N/A 0.019±0.00 0.344±0.00 N/A N/A N/A N/A N/A 0.243±0.00
ENST00000446997 N/A 0.118±0.00 N/A 11.411±1.05 N/A 0.260±0.00 0.003±0.00 N/A 0.079±0.00 0.016±0.01 0.022±0.00 N/A
ENST00000461456 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.00 N/A N/A
ENST00000606386 N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JH CIL_0008JH_0001 VISTA 2:160938384-161538940
CIL_0005L1 CIL_0005L1_0001 CGP 2:161308038-161425870
CIL_0003AH CIL_0003AH_0001 CGP 2:161416094-161985282
CIL_0005KV CIL_0005KV_0001 CGP 2:161424332-162074542

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0006811 TAS ion transport
GO:0006814 IEA sodium ion transport
GO:0006820 IEA anion transport
GO:0006821 NAS chloride transport
GO:0006885 IEA regulation of pH
GO:0008509 IEA anion transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0015301 IEA anion:anion antiporter activity
GO:0015701 NAS bicarbonate transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060303 slc4a10b solute carrier family 4, sodium bicarbonate transporter, member 10b protein_coding Danio_rerio
ENSDARG00000063133 SLC4A10 (2 of 2) solute carrier family 4, sodium bicarbonate transporter, member 10 protein_coding Danio_rerio
ENSMUSG00000026904 Slc4a10 solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 protein_coding Mus_musculus

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