C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4, sodium bicarbonate transporter, member 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446997 SLC4A10-004 ENSG00000144290 9606 + 2:161624426-161985253 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverOvaryPlacentaENST00000446997
Transcript ID Adrenal Brain Colon Heart Liver Ovary Placenta
ENST00000446997 0.118±0.00 11.411±1.05 0.260±0.00 0.003±0.00 0.079±0.00 0.016±0.01 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JH CIL_0008JH_0001 VISTA 2:160938384-161538940
CIL_0005L1 CIL_0005L1_0001 CGP 2:161308038-161425870
CIL_0003AH CIL_0003AH_0001 CGP 2:161416094-161985282
CIL_0005KV CIL_0005KV_0001 CGP 2:161424332-162074542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0006811 TAS ion transport
GO:0006814 IEA sodium ion transport
GO:0006820 IEA anion transport
GO:0006821 NAS chloride transport
GO:0006885 IEA regulation of pH
GO:0008509 IEA anion transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0015301 IEA anion:anion antiporter activity
GO:0015701 NAS bicarbonate transport
GO:0016020 IEA membrane
GO:0016021 NAS:IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112480 Slc4a10-002 protein_coding Mus_musculus 0 5705
ENSMUST00000102735 Slc4a10-001 protein_coding Mus_musculus 0 4385
ENSMUST00000054484 Slc4a10-003 protein_coding Mus_musculus 0 3057
ENSMUST00000155219 Slc4a10-004 processed_transcript Mus_musculus 0 2599
ENSMUST00000156534 Slc4a10-007 processed_transcript Mus_musculus 0 656
ENSMUST00000147917 Slc4a10-006 processed_transcript Mus_musculus 0 538

Loading